PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g00570.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 137aa    MW: 15381.6 Da    PI: 10.216
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g00570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-1396136243
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                      g WT++Ed  lv++v+++G + W+ Ia+ ++ gR +kqc++r
  Vradi01g00570.1  96 GWWTPQEDSSLVELVNEFGLKKWTQIAKFLP-GRIGKQCRER 136
                      56*****************************.********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.11190136IPR017930Myb domain
SuperFamilySSF466891.44E-1390136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-1692136IPR009057Homeodomain-like
SMARTSM007173.1E-494136IPR001005SANT/Myb domain
PfamPF002499.5E-1396136IPR001005SANT/Myb domain
CDDcd001673.59E-1298136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MLTPSLGSSL GGFANVSHHH HPMMLPPPNN NNVLHGQHDG KVIWDFSQKT MIHPSHASSS  60
SNSPSCLSLP NITQYKWESN QKIKMKKNTN DLIIKGWWTP QEDSSLVELV NEFGLKKWTQ  120
IAKFLPGRIG KQCRER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-1238136399MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-1238136399MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g00570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-136AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490478.11e-94transcription factor MYB118-like
TrEMBLA0A1S3T9N82e-93A0A1S3T9N8_VIGRR; transcription factor MYB118-like
STRINGGLYMA03G15870.22e-38(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4072722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.13e-16myb domain protein 3r-4