PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g01740.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 79aa    MW: 8114.32 Da    PI: 7.7399
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g01740.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer74.51.5e-2320651460
      ZF-HD_dimer 14 AaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                      a++Gg+avDGC+Efm+s g egt+aal+CaACgCHRnFH+r+ve+e
  Vradi01g01740.1 20 TANVGGYAVDGCREFMAS-GGEGTTAALTCAACGCHRNFHKRQVETE 65
                     699**************9.8889*******************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152316.312161IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.4E-222062IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.4E-182061IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-112175IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MGGLMKMHAN KGIIVSFCRT ANVGGYAVDG CREFMASGGE GTTAALTCAA CGCHRNFHKR  60
QVETEVVCEC SSPPSIGT*
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g01740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150442e-90AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508009.17e-36mini zinc finger protein 2
RefseqXP_017438792.17e-36PREDICTED: mini zinc finger protein 2
SwissprotQ9LJW51e-27MIF2_ARATH; Mini zinc finger protein 2
TrEMBLA0A0L9VPI32e-34A0A0L9VPI3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T8H52e-34A0A0S3T8H5_PHAAN; Uncharacterized protein
TrEMBLA0A1S3UPZ82e-34A0A1S3UPZ8_VIGRR; mini zinc finger protein 2
STRINGXP_007151284.13e-34(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF155034100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.11e-17mini zinc finger 2
Publications ? help Back to Top
  1. Bollier N, et al.
    At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato.
    Plant Cell, 2018. 30(1): p. 83-100
    [PMID:29298836]