PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g01940.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 301aa    MW: 34002.7 Da    PI: 8.7594
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g01940.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-1398149155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r +h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Vradi01g01940.1  98 QRITHITVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 149
                      799***************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.49E-1396153No hitNo description
SuperFamilySSF474593.79E-1696166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.58997148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1098149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1399163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MTLETLPSNE FSNFIVYDTI SATPFSSHDS SEASFLKSFV NYQEHDPSFD DSSMRTRKRK  60
ASEPEANGSK QNVVGVQGRK KRRRKPRVCK NKEEAETQRI THITVERNRR KQMNEHLAVL  120
RSLMPESYVQ RGDQASIVGG AIEFVKELEH LLQTLEARKL QLLQQEVVQT NENTVISKLM  180
QPPFAQFFLY PQYTWSQSPN KYTSKTKAAI ADIEVTLIET HANLRILTRK SPGQLTKLVS  240
GFQTLYLTVL HLNVTTIDPL VFYSISAKVE EGFQLGSVDG IASAVHHLLA RIEDEASLCC  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17884RKKRRRK
27885RKKRRRKP
37984KKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g01940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0943130.0BT094313.1 Soybean clone JCVI-FLGm-24B24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504502.10.0transcription factor bHLH71
SwissprotQ9C7T42e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S3UEN70.0A0A1S3UEN7_VIGRR; transcription factor bHLH71
STRINGXP_007156419.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]