PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g03340.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 258aa    MW: 28145.5 Da    PI: 5.0759
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g03340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68.1e-151495146
                     TSSS-HHHHHHHHHHHHHTTTT.....................................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.....................................tWktIartmgkgRtlkqcksrwqk 46
                     +g+W+++Ed  l ++ +++G+                                       W++Ia+ ++ gRt++++k++w++
  Vradi01g03340.1 14 KGPWSPDEDVTLRNYLEKHGTAgnwialpkkaglilslevslkrktklsatfmapleagKWSLIAAQLP-GRTDNDVKNHWNT 95
                     79******************99***********************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-20535IPR009057Homeodomain-like
PROSITE profilePS5129412.5439101IPR017930Myb domain
SMARTSM007175.3E-141399IPR001005SANT/Myb domain
SuperFamilySSF466899.94E-111498IPR009057Homeodomain-like
CDDcd001677.88E-91697No hitNo description
PfamPF002494.9E-77295IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2073102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRAPCCDKS IVKKGPWSPD EDVTLRNYLE KHGTAGNWIA LPKKAGLILS LEVSLKRKTK  60
LSATFMAPLE AGKWSLIAAQ LPGRTDNDVK NHWNTKLKKK FLAGNTGSST VATSYNNGTV  120
SSTSSSDQFS SSTIQPHVEA FVLNQKLMNS AWFDSYNILD LEKTSISVPL PMPQELVSFN  180
YSAPPSNEIS LPTFNATSLA QQNEDTQWFG YDYAEEDDPN LLAFVLDDLL MNDGSASSDH  240
IASSCVANQD SFYSSKT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g03340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494133.11e-156transcription factor MYB87-like
TrEMBLA0A1S3TK331e-155A0A1S3TK33_VIGRR; transcription factor MYB87-like
STRINGXP_007152944.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-36myb domain protein 36