PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi01g04230.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 243aa MW: 27803.9 Da PI: 4.5216

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi01g04230.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.6	2.1e-15	64	149	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++e+ +L+e+ ++ +l+r++l+ W ev++k+ +e + ers +qC++ +++l+++ykk+k+ + + s ++pyf++++ Vradi01g04230.1 64 EWSEHETFVLLEVWGDKFLQLGRNSLRSEEWHEVAEKVsEELKAERSVTQCRSVLDKLKRKYKKEKTKMDEM-GMGSCKWPYFKKMD 149 5***********************************788999**********************97.666779*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-19	63	151	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
DENEHEDFND DNDEGENGYD ENDIVGYPRI PKKRKVVVAP GSYEFAPRFK LSYGSRGSGS 60 SGEEWSEHET FVLLEVWGDK FLQLGRNSLR SEEWHEVAEK VSEELKAERS VTQCRSVLDK 120 LKRKYKKEKT KMDEMGMGSC KWPYFKKMDM LMASSARQEY GLACGVDSGD KRQQMMELEK 180 MRLDFNRELE LQKKQILERA QAEIAKIQEG DEEDTDTSTE NLIDNPGKDG DILIECPSFG 240 GT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi01g04230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027924384.1	2e-98	trihelix transcription factor ASIL2
Refseq	XP_027924385.1	2e-98	trihelix transcription factor ASIL2
Refseq	XP_027924386.1	2e-98	trihelix transcription factor ASIL2
Refseq	XP_027924387.1	2e-98	trihelix transcription factor ASIL2
TrEMBL	A0A4D6LU83	1e-98	A0A4D6LU83_VIGUN; Uncharacterized protein
STRING	XP_007152813.1	2e-90	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	4e-35	Trihelix family protein