PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g04530.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 207aa    MW: 23295.9 Da    PI: 4.2264
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g04530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-16855354
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                     ykGV ++k +g++vAeIrdp     +  r++lg+f+t++eAa a+++ ++++e
  Vradi01g04530.1  8 YKGVQRRK-WGKYVAEIRDPI----QgVRVWLGTFDTEQEAAMAYERKKNEFE 55
                     9***8887.**********82....36**********99**********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.68E-21649No hitNo description
SuperFamilySSF541711.63E-16654IPR016177DNA-binding domain
PROSITE profilePS5103218.057766IPR001471AP2/ERF domain
SMARTSM003803.4E-16772IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-21757IPR001471AP2/ERF domain
PfamPF008471.6E-10855IPR001471AP2/ERF domain
PRINTSPR003676.5E-9819IPR001471AP2/ERF domain
PRINTSPR003676.5E-93046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MRKPSSMYKG VQRRKWGKYV AEIRDPIQGV RVWLGTFDTE QEAAMAYERK KNEFERSRKR  60
DAVAFDSSKE VLFHASPSSV LDVCTTKASL DVSDLNDSVK EKFNVEKVGE GGGNDVEAVN  120
SEDNSTQLLL EEPVMPSLFG YDGFCLDEAE KRGILLDEEC YNFLDNDIKG GFMWNVEHGD  180
TTVLPPVDSA FDELAWIDET LDWESS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g04530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494298.11e-152ethylene-responsive transcription factor ERF118-like
RefseqXP_022639029.11e-152ethylene-responsive transcription factor ERF118-like
RefseqXP_022639036.11e-152ethylene-responsive transcription factor ERF118-like
TrEMBLA0A1S3TKK21e-150A0A1S3TKK2_VIGRR; ethylene-responsive transcription factor ERF118-like
STRINGXP_007152764.11e-106(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1598167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-18ERF family protein