PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g04570.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 234aa    MW: 25103.8 Da    PI: 9.0494
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g04570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.72.6e-264106198
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlrr+C++dC++++ +     p++q++++ +++k++G++ +l+ll ++p + ++++++sl+yeA+ r+ +P+ G++g++++++++l++
  Vradi01g04570.1   4 SCNGCRVLRRGCTADCPIRRSLqwiscPHSQSNATLFLAKFYGRQGLLNLLINAPSHLQPAVFKSLLYEACGRMVNPIFGSTGLLSTGNWHLCE 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallk 98 
                      ++a+++l +
  Vradi01g04570.1  98 AAAKAVLCG 106
                      **9998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.3493109IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-214102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MRFSCNGCRV LRRGCTADCP IRRSLQWISC PHSQSNATLF LAKFYGRQGL LNLLINAPSH  60
LQPAVFKSLL YEACGRMVNP IFGSTGLLST GNWHLCEAAA KAVLCGAPIQ QALLDGVESL  120
DFKACDIRHV ARSHKSYGPG ALKVVKSGTS KFKRRAAKPK VESTVAELGE SELFGQRSLS  180
QDSASGLTRT SENKIIGGEA DSSCSENVVV PARANGEEIE LLLTLGWGPL KNQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g04570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517407.11e-172LOB domain-containing protein 40
TrEMBLA0A1S3VGS21e-171A0A1S3VGS2_VIGRR; LOB domain-containing protein 40
STRINGGLYMA07G10180.11e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1818944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-58LOB domain-containing protein 41