PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g04660.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 246aa    MW: 27540.1 Da    PI: 6.0364
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g04660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.5e-08166213455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR +iN+++  L+ ++P +     k +  a +L + ++Y++sLq
  Vradi01g04660.1 166 SHSLAERVRRGKINEKLRCLQNIVPGC----YKTMGMAVMLDEIINYVQSLQ 213
                      8*************************9....35599999**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.80E-9160217No hitNo description
SuperFamilySSF474591.28E-15160228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-15162221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.723162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-5166213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAEFTENLQL QTIRPSSFPF LDIDPSMELI NQFIGINQHV IDNSNLTMHN LMPFSCDTFL  60
GPQEPEFPGN LDENFPALVH HVNHNALPVS LPIFQAENEI HEGKKRKSVD LPETSSANST  120
PAVSETGSKI KQSSGKGKRA KSNVTEEEKA KEVVHVRARR GQATDSHSLA ERVRRGKINE  180
KLRCLQNIVP GCYKTMGMAV MLDEIINYVQ SLQHQVEFLS LKLTAASTFY DFNSETDALE  240
TMQWQ*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g04660.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312560.0KT031256.1 Glycine max clone HN_CCL_43 bHLH transcription factor (Glyma07g10311.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506204.10.0transcription factor BEE 1
SwissprotQ8GWK73e-57BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A1S3UJT41e-180A0A1S3UJT4_VIGRR; transcription factor BEE 1
STRINGXP_007154151.11e-175(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.29e-58BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]