PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g04670.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 221aa    MW: 24607.8 Da    PI: 3.9729
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g04670.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-082068144
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrw 44
                     rg+W+ eEd+ll ++++ +G g+W+++a + g     kg+    c ++ 
  Vradi01g04670.1 20 RGPWSIEEDDLLGNYIANHGEGRWNLVAIRAGfveffKGLQMTRCLHKA 68
                     89****************************9998888888777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-91449IPR009057Homeodomain-like
PROSITE profilePS512949.3061576IPR017930Myb domain
SuperFamilySSF466896.79E-71651IPR009057Homeodomain-like
PfamPF002495.5E-72064IPR001005SANT/Myb domain
CDDcd001670.001512247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSTSSKSIIC YSEEDTELRR GPWSIEEDDL LGNYIANHGE GRWNLVAIRA GFVEFFKGLQ  60
MTRCLHKAQE SSPSAMSLQD QEIPMPSDGG SHYSSFGIEA TPETQHLNQH EQNSDSEHNN  120
GSSISNSESV NIQYMTQPLG CTTNQFQALD NYDFGICSYD SYNIDNSAYD MDSFNLAATM  180
DAQNLTLPVI GCQISETNSL NMESECSTRS NDELWQFMNI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g04670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-171AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494335.11e-123myb-related protein 305-like
TrEMBLA0A1S3TKQ11e-121A0A1S3TKQ1_VIGRR; myb-related protein 305-like
STRINGXP_007154150.16e-83(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.18e-12myb domain protein 62