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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vradi01g05570.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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| Family |
BBR-BPC |
| Protein Properties |
Length: 299aa MW: 32889.9 Da PI: 10.192 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vradi01g05570.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 346.1 | 8.5e-106 | 16 | 298 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd.........maflqrdkalaernkalverdnklla 83
md d+ + rn+gyyepa+s+k++lglqlmss++e+ r++ + ls++++a+++rd m++ rd+++++ +k+++
Vradi01g05570.1 16 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGgRNAAV-LSATNGAFHHRDismshatypMEY-XRDAWISS-------XXDKYMN 100
888888888*************************988766355555.9***********999999999999.99999999.......899**** PP
GAGA_bind 84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
+++++++ ++ +++t+s++++q+ + ++ + +ee+ +e++p++e + + ++kkrq++k+pk++kakk k+ ++++k++
Vradi01g05570.1 101 MIPTNHN--------YGGIPETSSAHQIQM-----IPPPELP-KEERAVEEEPVVE----KATGGSRKKRQSPKVPKSPKAKKSKRGPRVPKNE 176
***9997........99**********999.....3344344.4444455555544....455567778899**************99999877 PP
GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271
+++ +r++ +kk++++v+ng+++D+s++P+PvCsCtGa + CY+WG+GGWqSaCCtt +SvyPLP+stkrrgaRiagrKmS gafkk+Lek
Vradi01g05570.1 177 NAPTV--HRARVPKKTTEIVINGIDMDISSIPIPVCSCTGAAQXCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEK 268
77777..69************************************************************************************* PP
GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
LaaeGy++snp+DL+++WAkHGtnkfvtir
Vradi01g05570.1 269 LAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 298
*****************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MCSILNCVVS SFGVVMDGDN GLNIRNWGYY EPATSFKSHL GLQLMSSMPE KPLIGGRNAA 60
VLSATNGAFH HRDISMSHAT YPMEYXRDAW ISSXXDKYMN MIPTNHNYGG IPETSSAHQI 120
QMIPPPELPK EERAVEEEPV VEKATGGSRK KRQSPKVPKS PKAKKSKRGP RVPKNENAPT 180
VHRARVPKKT TEIVINGIDM DISSIPIPVC SCTGAAQXCY RWGSGGWQSA CCTTGMSVYP 240
LPMSTKRRGA RIAGRKMSIG AFKKVLEKLA AEGYNFSNPI DLRTYWAKHG TNKFVTIR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
