PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g05580.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family BBR-BPC
Protein Properties Length: 634aa    MW: 70433.2 Da    PI: 10.1552
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g05580.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind339.39.4e-104643461301
        GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd.........maflqrdkalaernkalverdnklla 83 
                      md d+  + rn+gyyepa+s+k++lglqlmss++e+     r++ + ls++++a+++rd         m++  rd+++++         +k+++
  Vradi01g05580.1  64 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGgRNAAV-LSATNGAFHHRDismshatypMEY-XRDAWISS-------XXDKYMN 148
                      888888888*************************988766355555.9***********999999999999.99999999.......899**** PP

        GAGA_bind  84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
                      +++++++        ++ +++t+s++++q+     + ++  + +ee+ +e++p++e    + +  ++kkrq++k+pk++kakk k+ ++++k++
  Vradi01g05580.1 149 MIPTNHN--------YGGIPETSSAHQIQM-----IPPPELP-KEERAVEEEPVVE----KATGGSRKKRQSPKVPKSPKAKKSKRGPRVPKNE 224
                      ***9997........99**********999.....3344344.4444455555544....455567778899**************99999877 PP

        GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271
                      +++    +r++ +kk++++v+ng+++D+s++P+PvCsCtGa + CY+WG+GGWqSaCCtt +SvyPLP+stkrrgaRiag KmS gafkk+Lek
  Vradi01g05580.1 225 NAPTV--HRARVPKKTTEIVINGIDMDISSIPIPVCSCTGAAQXCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGXKMSIGAFKKVLEK 316
                      77777..69************************************************************************************* PP

        GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      LaaeGy++snp+DL+++WAkHGtnkfvtir
  Vradi01g05580.1 317 LAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 346
                      *****************************8 PP
2GAGA_bind314.73.1e-9637163319301
        GAGA_bind  19 slkenlglqlmssiaerdaki.rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllvenslasalpvgvqvl 102
                      ++ ++lglqlmss++e+     r++ + ls++++a+++rd         m++  rd+++++        ++k++++++++++        ++ +
  Vradi01g05580.1 371 AF-SHLGLQLMSSMPEKPLIGgRNAAV-LSATNGAFHHRDigmshatypMEY-TRDAWISS-------YRDKYMNMIPTNHN--------YGGI 446
                      44.49**********988766355555.9***********************.99*****9.......7889******9997........99** PP

        GAGA_bind 103 sgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl 196
                      ++t+s++++q+     + ++  + +ee+ +e++p++e    + +  ++kkrq++k+pk++kakk k+ ++++k+++++    +r++ +kk++++
  Vradi01g05580.1 447 PETSSAHQIQM-----IPPPELP-KEERAVEEEPVVE----KATGGSRKKRQSPKVPKSPKAKKSKRGPRVPKNENAPTV--HRARVPKKTTEI 528
                      ********999.....3344344.4444455555544....455567778899**************9999987777777..69********** PP

        GAGA_bind 197 vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWA 290
                      v+ng+++D+s++P+PvCsCtGa + CY+WG+GGWqSaCCtt +SvyPLP+stkrrgaRiag KmS gafkk+LekLaaeGy++snp+DL+++WA
  Vradi01g05580.1 529 VINGIDMDISSIPIPVCSCTGAAQXCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGXKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWA 622
                      ********************************************************************************************** PP

        GAGA_bind 291 kHGtnkfvtir 301
                      kHGtnkfvtir
  Vradi01g05580.1 623 KHGTNKFVTIR 633
                      **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062174.7E-10864346IPR010409GAGA-binding transcriptional activator
SMARTSM012269.9E-15764346IPR010409GAGA-binding transcriptional activator
PfamPF062172.1E-103362633IPR010409GAGA-binding transcriptional activator
SMARTSM012267.2E-138368633IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MDLDQNPEAE IFGTGGFACV HLWDLDNLPR LLVRLYFSSN KGEFLVYIHW IVYLQIVSSF  60
GVVMDGDNGL NIRNWGYYEP ATSFKSHLGL QLMSSMPEKP LIGGRNAAVL SATNGAFHHR  120
DISMSHATYP MEYXRDAWIS SXXDKYMNMI PTNHNYGGIP ETSSAHQIQM IPPPELPKEE  180
RAVEEEPVVE KATGGSRKKR QSPKVPKSPK AKKSKRGPRV PKNENAPTVH RARVPKKTTE  240
IVINGIDMDI SSIPIPVCSC TGAAQXCYRW GSGGWQSACC TTGMSVYPLP MSTKRRGARI  300
AGXKMSIGAF KKVLEKLAAE GYNFSNPIDL RTYWAKHGTN KFVTIRLYLK TLQTDKLQRV  360
LRWSDSINDS AFSHLGLQLM SSMPEKPLIG GRNAAVLSAT NGAFHHRDIG MSHATYPMEY  420
TRDAWISSYR DKYMNMIPTN HNYGGIPETS SAHQIQMIPP PELPKEERAV EEEPVVEKAT  480
GGSRKKRQSP KVPKSPKAKK SKRGPRVPKN ENAPTVHRAR VPKKTTEIVI NGIDMDISSI  540
PIPVCSCTGA AQXCYRWGSG GWQSACCTTG MSVYPLPMST KRRGARIAGX KMSIGAFKKV  600
LEKLAAEGYN FSNPIDLRTY WAKHGTNKFV TIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g05580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503307.10.0protein BASIC PENTACYSTEINE2-like
RefseqXP_014503312.10.0protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD06e-87BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A1S3UBA00.0A0A1S3UBA0_VIGRR; protein BASIC PENTACYSTEINE2-like
STRINGXP_007152627.10.0(Phaseolus vulgaris)
STRINGXP_007152630.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.36e-80basic pentacysteine 2