PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g06990.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 173aa    MW: 19444.3 Da    PI: 7.0079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g06990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.12.4e-066382155
                     HHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 21 eeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                     ++Lr+llP       ++K s ++ + +A++YI++Lq
  Vradi01g06990.1  6 NNLRSLLPLeY---IKGKRSTSDHVHEAMNYINHLQ 38
                     68*******77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.975137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-5456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-8458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGKLCNNLRS LLPLEYIKGK RSTSDHVHEA MNYINHLQDK VKQLQEKRDA LLKVSNNLSS  60
IVPENESSCV THLPPLVFVH PFPGGIEIIC SHSFKKSVFP MSRLLDILHK EGLDVVNTTS  120
IRRNGRFIHT IQSEDPNHSN MVDTDYSELQ IKIMEALSSS SLQETLPVPE NC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g06990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-157AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510633.11e-124transcription factor bHLH118
TrEMBLA0A1S3UX481e-123A0A1S3UX48_VIGRR; transcription factor bHLH118
STRINGXP_007152369.15e-96(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.18e-26bHLH family protein