PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g07310.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 262aa    MW: 28750.5 Da    PI: 9.714
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g07310.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.46.7e-3150128274
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......e 74 
                       g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++       
  Vradi01g07310.1  50 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTlgypslV 128
                      689*************************************************************777775554432221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-2852193IPR005333Transcription factor, TCP
PROSITE profilePS5136931.09752110IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MINSTKEADF PLKQEGVSSS DHEKAKASSS SSSQWLKLKD PRIVRVSRAF GGKDRHSKVC  60
TVRGLRDRRV RLSVPTAIHL YDLQDRLGLN QPSKVVDWLL NAAKHEIDEL PPLPIPPGNF  120
TLGYPSLVAC NEVSTSREGE VAQWANHGFV NQTDIHSINV VPIPSTLALS TGSTTPQILV  180
CPSGATQPYF PSHVAAMEMN ARQLNHYQML TSASQNLFAN SSQQLMSQSG KVPFSLVRPK  240
LFHSPNSSES HSRKDQDFPS K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-1857111155Putative transcription factor PCF6
5zkt_B6e-1857111155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g07310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511156.16e-92transcription factor TCP13
RefseqXP_014511237.16e-92transcription factor TCP13
RefseqXP_022640526.16e-92transcription factor TCP13
TrEMBLA0A1S3UYK01e-90A0A1S3UYK0_VIGRR; transcription factor TCP13
STRINGGLYMA19G03786.25e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.18e-40plastid transcription factor 1