PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g07670.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 216aa    MW: 24451.1 Da    PI: 4.4571
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g07670.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-194289253
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53
                     ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l
  Vradi01g07670.1 42 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLL 89
                     789******.7*********33....35*********************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.70E-274197No hitNo description
PfamPF008471.1E-134287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-244296IPR001471AP2/ERF domain
SMARTSM003803.4E-2842105IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-174295IPR016177DNA-binding domain
PROSITE profilePS5103218.21542103IPR001471AP2/ERF domain
PRINTSPR003672.1E-84354IPR001471AP2/ERF domain
PRINTSPR003672.1E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MARKRKVGEV VEERNICEGT MAWDEMMKQA AALGGVQRAR KRFVGVRQRP SGRWVAEIKD  60
TIQKIRVWLG TFDTAEEAAR AYDEAACLLR DYSTSSNDFI NNSAQIDYIT SSFESCLTED  120
TKVDVQYKTS IVTPQTSSTD DSNSGVEDSE EEGTDFRFLD NIAPPGYYSP FEMAEEMEEP  180
VEAENYGGDE PSMLRAMMKR MTYERNKHEG KRNNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g07670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495794.18e-65dehydration-responsive element-binding protein 2F-like
TrEMBLA0A1S3TPV52e-63A0A1S3TPV5_VIGRR; dehydration-responsive element-binding protein 2F-like
STRINGXP_007151265.13e-55(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2846122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-19related to AP2 11