PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g08250.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 128aa    MW: 14187.2 Da    PI: 10.9557
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g08250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.32.7e-0812403357
                     HHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox 33 LAkkl....gLterqVkvWFqNrRakekk 57
                     + k l     + +++V++WFqNrR + ++
  Vradi01g08250.1 12 IRKLLekfgTVGDANVFYWFQNRRSRSRR 40
                     4444454467889*************997 PP
2Wus_type_Homeobox63.83.5e-211422465
  Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q
    Vradi01g08250.1  1 MVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQ 42
                       79**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.697141IPR001356Homeobox domain
SuperFamilySSF466894.29E-8348IPR009057Homeodomain-like
PfamPF000466.8E-6740IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.5E-51745IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MVNPPKDETV RIRKLLEKFG TVGDANVFYW FQNRRSRSRR RQRQIQATLN QGGGARFGGI  60
SGLITVFING VPTEVPRGPM DIKTAFGEDV MLVHSSGISV PTNEFGFLMQ GLQHGESYFV  120
VSKQTQV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g08250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-101AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496114.13e-42WUSCHEL-related homeobox 11 isoform X1
SwissprotQ6X7J38e-26WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLA0A3Q7H2E03e-44A0A3Q7H2E0_SOLLC; Uncharacterized protein
STRINGPOPTR_0019s05730.17e-43(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58983152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.18e-28WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  2. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  4. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]