PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi01g08260.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 466aa MW: 50749.6 Da PI: 6.9143

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi01g08260.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.3e-39	109	168	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ Vradi01g08260.1 109 PDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHL 168 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	106	166	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.0E-32	111	167	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.463	113	167	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	115	151	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MSNKDPGIRL FGRKIPLPES QIPASSQMGY QIQANSATMN AYNGLKKKEV EIPCTENSEQ 60 PENYSDSTDR KQETLHNDRQ ENESKVNSKT VENNTESSST DQDKIFKKPD KILHCPRCNS 120 LDTKFCYFNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGA GRRKNKHLAS QYRHIIVSCD 180 GIPTTSDSSC HQLATTLQSA AVFRSSTDNG TVLKFCPDAP PLCESMESML NLKEQNRSAD 240 ENTVNYAEKG EEEVSLCGSS SMTNACTPRN NSTEPTASKP MQCYPVPPWI FPWNPDWNNV 300 ASTASVHPSS LQMCNPYNSA DPASMQWCPT PIMAVPTICP PSFPLQFVPG SYWSGPPVYG 360 GGTGAASMGF NACLSPTSST SNSCCSGNGS PTLGKHTRDN LSTDEEKSDM CVLASSGTNP 420 ECVPEGTISK RAKAKEGKDR VLGVSQILEA NPAAISRAHA FQEGM*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MSNKDPGIRL FGRKIPLPES QIPASSQMGY QIQANSATMN AYNGLKKKEV EIPCTENSEQ  60
PENYSDSTDR KQETLHNDRQ ENESKVNSKT VENNTESSST DQDKIFKKPD KILHCPRCNS  120
LDTKFCYFNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGA GRRKNKHLAS QYRHIIVSCD  180
GIPTTSDSSC HQLATTLQSA AVFRSSTDNG TVLKFCPDAP PLCESMESML NLKEQNRSAD  240
ENTVNYAEKG EEEVSLCGSS SMTNACTPRN NSTEPTASKP MQCYPVPPWI FPWNPDWNNV  300
ASTASVHPSS LQMCNPYNSA DPASMQWCPT PIMAVPTICP PSFPLQFVPG SYWSGPPVYG  360
GGTGAASMGF NACLSPTSST SNSCCSGNGS PTLGKHTRDN LSTDEEKSDM CVLASSGTNP  420
ECVPEGTISK RAKAKEGKDR VLGVSQILEA NPAAISRAHA FQEGM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi01g08260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014503999.1	0.0	cyclic dof factor 1-like isoform X2
TrEMBL	A0A1S3UDG7	0.0	A0A1S3UDG7_VIGRR; cyclic dof factor 1-like isoform X2
STRING	XP_007151521.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-48	cycling DOF factor 2