PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi01g09140.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 72aa MW: 7944.85 Da PI: 9.3813

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi01g09140.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	49.5	1.6e-15	1	46	38	83
TCP 38 eLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 +LGfdk+s+t+eWL++++k+aikel+++++s++se a+s sss++ Vradi01g09140.1 1 MLGFDKASNTLEWLFNKSKRAIKELARSKNSTNSEEGAKSFSSSSD 46 8***************************777775542222222221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	17.548	1	25	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.4E-13	1	53	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 72 aa Download sequence Send to blast
MLGFDKASNT LEWLFNKSKR AIKELARSKN STNSEEGAKS FSSSSDSVSL QFSGLQIFGK 60 SWEECTNPRL H*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi01g09140.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	8e-68	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007151756.1	7e-21	hypothetical protein PHAVU_004G072100g
TrEMBL	V7C394	2e-19	V7C394_PHAVU; Uncharacterized protein
STRING	XP_007151756.1	3e-20	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	4e-10	TCP family protein