PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi01g09670.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 166aa MW: 18844.7 Da PI: 10.3196

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi01g09670.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.5	3e-54	9	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+ +yL+kkv++ +l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ Vradi01g09670.1 9 LPPGFRFHPTDEELILHYLRKKVASIPLPV-SIIAEVDIYKCDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVA 101 79**************************.89***********988899************************************ PP NAM 95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +e+ g+kk Lvfykg+ pkg+kt+W+mheyrl Vradi01g09670.1 102 SlgggVREHFGVKKALVFYKGKPPKGVKTNWIMHEYRL 139 998776677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-60	5	144	IPR003441	NAC domain
PROSITE profile	PS51005	55.786	9	162	IPR003441	NAC domain
Pfam	PF02365	1.4E-28	10	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MGTPQSNNLP PGFRFHPTDE ELILHYLRKK VASIPLPVSI IAEVDIYKCD PWELPAKAAF 60 GEKEWYFFSP RDRKYPNGAR PNRAAASGYW KATGTDKNIV ASLGGGVREH FGVKKALVFY 120 KGKPPKGVKT NWIMHEYRLV DTNKPVRIKD TSMRVSFPIY FHHNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-63	8	144	19	150	NAC domain-containing protein 19
3swm_B	2e-63	8	144	19	150	NAC domain-containing protein 19
3swm_C	2e-63	8	144	19	150	NAC domain-containing protein 19
3swm_D	2e-63	8	144	19	150	NAC domain-containing protein 19
3swp_A	2e-63	8	144	19	150	NAC domain-containing protein 19
3swp_B	2e-63	8	144	19	150	NAC domain-containing protein 19
3swp_C	2e-63	8	144	19	150	NAC domain-containing protein 19
3swp_D	2e-63	8	144	19	150	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi01g09670.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	1e-166	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014517325.1	1e-112	NAC transcription factor 47
Swissprot	Q84TD6	6e-82	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A1S3VGC1	1e-111	A0A1S3VGC1_VIGRR; NAC transcription factor 47
STRING	XP_007151816.1	1e-109	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6621	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	1e-84	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]