PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi01g10590.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 168aa MW: 18720.6 Da PI: 8.6489

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi01g10590.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.5	6.4e-29	87	145	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk+s++ r+YY+C+s gC+vkk+ver++ed ++v++tYeg Hnhe Vradi01g10590.1 87 MDDGYKWRKYGKKSVKSSPNLRNYYKCSSGGCSVKKRVERDREDSSYVITTYEGVHNHE 145 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.6E-32	74	147	IPR003657	WRKY domain
SuperFamily	SSF118290	1.28E-26	79	147	IPR003657	WRKY domain
PROSITE profile	PS50811	30.182	82	147	IPR003657	WRKY domain
SMART	SM00774	9.5E-32	87	146	IPR003657	WRKY domain
Pfam	PF03106	9.2E-23	88	145	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MPPSSPEIAL SDFLLLDDFL HHHHGDSLSS QSTESSEKPT FSDTTHGFTT GATSKNNNNI 60 MQNTNGGSKA RLGPRVAFRT KSELEIMDDG YKWRKYGKKS VKSSPNLRNY YKCSSGGCSV 120 KKRVERDRED SSYVITTYEG VHNHESPFTT YYSPISFLHS DHSTSSK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-25	75	147	2	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi01g10590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014507444.1	1e-102	probable WRKY transcription factor 51
Swissprot	Q93WU9	2e-40	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A1S3UNC8	1e-101	A0A1S3UNC8_VIGRR; probable WRKY transcription factor 51
STRING	GLYMA05G31800.1	4e-83	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	5e-42	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]