PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g10970.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 470aa    MW: 53355.4 Da    PI: 4.2431
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g10970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS241.14.8e-741154582356
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       +lLl+ Aeav++++ ela+ ++++l++ +s ++    ++Rla++f+++L  + +++ + l +  ++s     ++ +++ ++++++e+sP++kf
  Vradi01g10970.1 115 ADLLLTGAEAVEAQNWELATDIIEKLNNASSLEKgdGLLNRLAFFFAQGLYYKSTNEPELLLQRGAVS-----THRDAFCVFQVLQELSPYVKF 203
                      679**************************88765434689************9999444444333333.....45699999************* PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                      +h+taNqaIlea+eg e vHiiDfdi++G+QWp+L+  La R++++ slR+ ++   ++  + + e+tg+rL++fA++++ pf f+ ++++r e
  Vradi01g10970.1 204 AHFTANQAILEATEGVENVHIIDFDIMEGIQWPPLMVDLAMRKNSTTSLRVSAITV-DERGAASAEQTGRRLKEFAASINFPFMFDQMMMEREE 296
                      *******************************************************9.55689999**********************9888877 PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsl.eaklp 276
                      d+e   +  + gE+++Vn+++  + ++++s s+ +   ++L+ v++l P++vv+ve+e    + + s sF+e f+eal++ysa+ dsl ++  +
  Vradi01g10970.1 297 DIE--GI--EVGETVIVNCMID-QWMPNRSFSVVK---TFLDGVRKLWPRLVVLVEEElfnfSRLKSMSFVEFFCEALHHYSAVCDSLgSSVWG 382
                      774..44..55**********5.678889999999...********************8775556999********************555556 PP

             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                      +++ e + +E+e+lg +i + v +   e++er+     W+e + +  GF+ vp+s+ + +qak l++ ++  gy v+ e+g
  Vradi01g10970.1 383 SHKMESRLIEKEILGLRILDSVRQFPCEKKERKV----WEEGFYSlKGFECVPMSSCNISQAKFLVSLFG-GGYWVQFEKG 458
                      6669999*********************888877....***997758***********************.8899998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.69688457IPR005202Transcription factor GRAS
PfamPF035141.6E-71115458IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDYEEFDFSF GSPYMNQLHE CCLENAFPFQ TEDISSPNTI MDEMFGEESV EGLLLQHPNN  60
QDFGFMNHND PPEIEFCDGF GSSPEENVHV SMEEEEGDCY LKGIQAELME QTSLADLLLT  120
GAEAVEAQNW ELATDIIEKL NNASSLEKGD GLLNRLAFFF AQGLYYKSTN EPELLLQRGA  180
VSTHRDAFCV FQVLQELSPY VKFAHFTANQ AILEATEGVE NVHIIDFDIM EGIQWPPLMV  240
DLAMRKNSTT SLRVSAITVD ERGAASAEQT GRRLKEFAAS INFPFMFDQM MMEREEDIEG  300
IEVGETVIVN CMIDQWMPNR SFSVVKTFLD GVRKLWPRLV VLVEEELFNF SRLKSMSFVE  360
FFCEALHHYS AVCDSLGSSV WGSHKMESRL IEKEILGLRI LDSVRQFPCE KKERKVWEEG  420
FYSLKGFECV PMSSCNISQA KFLVSLFGGG YWVQFEKGRS ELNSSIHGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-3312244727349Protein SCARECROW
5b3h_A3e-3312244726348Protein SCARECROW
5b3h_D3e-3312244726348Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g10970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497718.10.0scarecrow-like protein 23
TrEMBLA0A1S3TVB60.0A0A1S3TVB6_VIGRR; scarecrow-like protein 23
STRINGXP_007159815.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.12e-40GRAS family protein