PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g11060.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 695aa    MW: 76216.2 Da    PI: 5.8144
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g11060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.9e-07204224526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f+++G C+yG  C+F+H+
  Vradi01g11060.1 204 PCK-FYAFGNCRYGKDCRFSHD 224
                      799.8888*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035697101122IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.277111123IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.38135162IPR000571Zinc finger, CCCH-type
SMARTSM003569.3136161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.488199226IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-5199225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6200224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4204225IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MSGNGRNTSS KLDSGDGPEF ASYGTTSSNN SNSSYLERND NLNPRMGFSN EESFSGGRCS  60
NKDDIVVSKD DRVSDTQNTD GSNKMELSPV NENLENKYSQ SPKTGCSRSD RRGSKCHFLH  120
GDNQNGSLLY SSPSGRSKGT CMNCENERCR MGESCKYMHH ENSSKFNKAS IDESTGEMEI  180
DRECRGGSFE KGGPHGRNQR SDIPCKFYAF GNCRYGKDCR FSHDRQACGS PSRGFKNDLL  240
RSSGGDQALD RPKSSDGQDL DGSVAGADNK KGIMVDPEPG FNTLPVDDER GHSLDKNTVH  300
GESAFSSDVK EAKNDSSNVH TCQSVGADIW PGNEEMSHNW NYGVTSPIPI KEEHEQSKQQ  360
VSPEQVIHQN VNVSQSSSCE EVGQSQLAPS TVPPSVRTIE SVQNQEVFAE EKQTTGANVM  420
DANIPQVGSS NPPIQNMITK ELLAPLFSAS LLYIFGAILQ LPKISTPSVS LDPKGTPFQS  480
KTEESGNPVS ITSTKPGPAV GLLKPRDPRR KFRESMIANE KKVVPTISPS QDITKDTAEI  540
PSLLSDSVQH FDESKKSAFS EEQLVKSEHS IELQKGENVE DGNEKNKMVA EGKPSSSTCE  600
PEDAKTVKDV QGIQAFKFEL VEFVKELLDP AWKCGKIKKE DYKTIVKKVA DKVTDTVQPP  660
HIPQTKEQID RYLSVSKTKI DKLVQAYVEK FQKT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g11060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017431966.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
RefseqXP_017431969.10.0PREDICTED: zinc finger CCCH domain-containing protein 38
TrEMBLA0A0L9TJE90.0A0A0L9TJE9_PHAAN; Uncharacterized protein
STRINGXP_004503947.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-09C3H family protein