PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g11250.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 464aa    MW: 52942.2 Da    PI: 5.5829
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g11250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS294.82.2e-90804611374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lLl+ A+ +++++  ++ + L +l +++s  gd++qR++ayf+ +Laarl+   s  y+ +  ++ts    +ee+ a++ ++ vsP+++f+
  Vradi01g11250.1  80 LIHLLLSTATSIDERNYCATLENLIELYQTVSLIGDSVQRVVAYFADGLAARLLTRKSPFYDMVMEEPTS----EEEFLAFTDLYRVSPYYQFA 169
                      689****************************************************999999988777775....788889999*********** PP

             GRAS  95 hltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel..gvpfefn 179
                      h+taNqaIlea e+e     +++H+iDfd+s+G+QWp+L+q+L++++  ++  slRiTg+g+    + +el+et+ rL +f + +  ++ fef+
  Vradi01g11250.1 170 HFTANQAILEAYEEEeernnKALHVIDFDVSYGFQWPSLIQSLSEKAtsGNRISLRITGFGN----NLKELQETEARLVSFSKGFsnQLVFEFQ 259
                      *************9988887889**********************99755566*********....99**************966226888999 PP

             GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                       l+ ++    +l +Lr k++E+laVnlv  l +l   s       +++L lv sl P +vv+v qe +++ ++Fl rf+e+l+y++a+fdsl+ 
  Vradi01g11250.1 260 GLLRSS---SRLVNLRRKKNETLAVNLVSYLNTLS--SFMN---VSDTLGLVHSLGPSIVVLVKQEGSRSLKTFLSRFTESLHYFAAMFDSLDD 345
                      974444...445699**************999997..3333...347*********************************************** PP

             GRAS 274 klpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkv........ksdg....yrveee 354
                       lp es er  +E++llg+ei++++    +     + e++e+W+ r+e+ GF   ++s+k + qaklll++         +++g    +rv e+
  Vradi01g11250.1 346 CLPLESTERLRIEKKLLGKEIKSMLNYDMDGvDCPKYERMETWKTRMENHGFVGRKISSKCVIQAKLLLKMRthyyplqfEEEGgsggFRVSER 439
                      *************************988776457899********************************9861111111111112223666655 PP

             GRAS 355 .sgslv.lgWkdrpLvsvSaWr 374
                       +g+++ lgW++r L++vSaW+
  Vradi01g11250.1 440 dEGTVIsLGWQNRFLLTVSAWQ 461
                      4555669**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.2554427IPR005202Transcription factor GRAS
PfamPF035147.5E-8880461IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MEGSEEEELL NLTLSVDAGG ERRKKGRARD DDTNSLVFPM KSSEGYEGKI FRLLQMRELM  60
LREDHRRKGV VEDGNNGLPL IHLLLSTATS IDERNYCATL ENLIELYQTV SLIGDSVQRV  120
VAYFADGLAA RLLTRKSPFY DMVMEEPTSE EEFLAFTDLY RVSPYYQFAH FTANQAILEA  180
YEEEEERNNK ALHVIDFDVS YGFQWPSLIQ SLSEKATSGN RISLRITGFG NNLKELQETE  240
ARLVSFSKGF SNQLVFEFQG LLRSSSRLVN LRRKKNETLA VNLVSYLNTL SSFMNVSDTL  300
GLVHSLGPSI VVLVKQEGSR SLKTFLSRFT ESLHYFAAMF DSLDDCLPLE STERLRIEKK  360
LLGKEIKSML NYDMDGVDCP KYERMETWKT RMENHGFVGR KISSKCVIQA KLLLKMRTHY  420
YPLQFEEEGG SGGFRVSERD EGTVISLGWQ NRFLLTVSAW QPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-5410346242380Protein SCARECROW
5b3h_A4e-5410346241379Protein SCARECROW
5b3h_D4e-5410346241379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g11250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497895.10.0scarecrow-like protein 21 isoform X1
TrEMBLA0A1S3TVX10.0A0A1S3TVX1_VIGRR; scarecrow-like protein 21 isoform X1
STRINGXP_007151894.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.14e-50GRAS family protein