PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g12680.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 132aa    MW: 14566.6 Da    PI: 7.4248
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g12680.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26082.66.1e-266103198
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      aC  C+++ ++  ++C + +yfp++++++f+n+ +lFG +n+l+l++ +++++r+ +++s++ eA +  +dP++Ga+g +l+l++q+++++ el
  Vradi01g12680.1   6 ACVLCRYQHKRHDASCQFGQYFPSNRASDFENACRLFGLANLLRLMRCAEPSQRQVMANSILTEASMFGNDPIHGALGQVLTLNNQIQSAEREL 99 
                      69*******************************************************************************************9 PP

           DUF260  95 allk 98 
                      + ++
  Vradi01g12680.1 100 DFVN 103
                      9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.1085106IPR004883Lateral organ boundaries, LOB
PfamPF031957.6E-256102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MSGHYACVLC RYQHKRHDAS CQFGQYFPSN RASDFENACR LFGLANLLRL MRCAEPSQRQ  60
VMANSILTEA SMFGNDPIHG ALGQVLTLNN QIQSAERELD FVNTMLAQCS LQSTSNVSNT  120
PLVTLLLHLS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-15712412130LOB family transfactor Ramosa2.1
5ly0_B8e-15712412130LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g12680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-156AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027911404.12e-61LOB domain-containing protein 9-like
TrEMBLA0A4D6LBU42e-59A0A4D6LBU4_VIGUN; Lateral organ boundary
STRINGXP_007133438.18e-52(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1630089
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19820.11e-21LOB domain-containing protein 9