PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g13660.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 585aa    MW: 64095.4 Da    PI: 6.4425
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g13660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS249.41.4e-762215742360
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      +++L+e+A a+ +g+  +a+++L+rl+       + + +l+ +++ AL++r++     +    p++e       e++ +++l  e + ++k++ 
  Vradi01g13660.1 221 KQTLMEAASAIVEGKYDMATEILNRLNGP-----NRTDKLTDCMVLALKSRMNP----VEYPPPVKEL---FGYEHAESTQLILENFMCFKVGL 302
                      689***********************854.....6789***************9....3323333333...499999***************** PP

             GRAS  96 ltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++aN aIlea+ +e   ++  ++Df+i+qG Q+p Ll+aL++R ++  +l+i +v++  sgs+++++++g+ L+++Ae+ ++ fef+++ +++l
  Vradi01g13660.1 303 MAANLAILEAAFEEkteNKFCVVDFEIGQGKQYPHLLNALSAR-GQNVTLKIVAVAE--SGSEDRVHAVGDMLSRLAERKRIGFEFRLVPTQKL 393
                      *********97555466899**********************9.6669*********..77***************************9999** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl...eaklpr 277
                      ++l+  +L ++++E+l Vn++++l +++desvs+e++rde+L+ vk+l P+vv++veqe++ n+++Fl+r++e+l++y al++s+   +++ + 
  Vradi01g13660.1 394 TELTRVSLGCNEDEVLMVNFAFKLNKIPDESVSTENPRDELLRRVKGLTPRVVTIVEQEMNANTAPFLARVAETLSFYGALLESMtsrDNNNSI 487
                      ************************************************************************************9533344555 PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.....sdgyrveeesgslvl 360
                      +s++r+ +E+  l r++ n vaceg++r+er e ++kWr+r+++aGF+  pls+++a+++k+ l  +      + g +v+ee+g++v+
  Vradi01g13660.1 488 NSSDRVRLEEG-LTRKLHNSVACEGRDRIERSEVFGKWRARMSMAGFELKPLSQNMAESIKSRLTGTTnnnrvNSGLTVKEENGAFVF 574
                      66*********.**************************************************99766521013457999999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.528194563IPR005202Transcription factor GRAS
PfamPF035144.8E-74221574IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MSSPGFTGGG GASEYFAGAG GFTGRSIPAA TMNNPNGVAT ATANLHPLYR TQQQNLPAIF  60
SQGSMDNFPE LHNQNPSLYQ QQRFGVPLLH QLRPQPINLP SNGSGPMPSP NFGYRNSDLG  120
MPQNRVRLSG SLPVPVQVAE PEKKIMDHRL LELEKQLLED NDEGEADAAS VITTSEWSET  180
YQNLISPGPV QKLASTSPTS STTSSTSSSS SIASPASGCS KQTLMEAASA IVEGKYDMAT  240
EILNRLNGPN RTDKLTDCMV LALKSRMNPV EYPPPVKELF GYEHAESTQL ILENFMCFKV  300
GLMAANLAIL EAAFEEKTEN KFCVVDFEIG QGKQYPHLLN ALSARGQNVT LKIVAVAESG  360
SEDRVHAVGD MLSRLAERKR IGFEFRLVPT QKLTELTRVS LGCNEDEVLM VNFAFKLNKI  420
PDESVSTENP RDELLRRVKG LTPRVVTIVE QEMNANTAPF LARVAETLSF YGALLESMTS  480
RDNNNSINSS DRVRLEEGLT RKLHNSVACE GRDRIERSEV FGKWRARMSM AGFELKPLSQ  540
NMAESIKSRL TGTTNNNRVN SGLTVKEENG AFVFLAQHPR LRFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-2229958091366GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g13660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517836.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-122SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A1S3VHK60.0A0A1S3VHK6_VIGRR; scarecrow-like protein 8
STRINGXP_007152201.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-119SCARECROW-like 8