PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0206s00170.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family YABBY
Protein Properties Length: 178aa    MW: 19800.7 Da    PI: 9.4587
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0206s00170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY40.21.2e-1216582462
              YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaesh 62
                       vsvP +sl++v tvrCGhCtsllsvn++k+s    +lla+ s 
  Vradi0206s00170.1 16 VSVPCSSLSTVATVRCGHCTSLLSVNMNKTSffpfHLLASLSP 58
                       9***************************998677677777665 PP
2YABBY108.61.2e-3380143103165
              YABBY 103 enedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165
                        + e+e++p++   v++PPekrqr Psaynrfikeei+r+ka+nP+++hreafs+aaknWa fP+
  Vradi0206s00170.1  80 DCEEEKTPQTSSvVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPKMAHREAFSTAAKNWANFPP 143
                        34455666665559*************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.1E-4815143IPR006780YABBY protein
SuperFamilySSF470951.23E-987144IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.6E-694144IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MLRRMWILYH NINGNVSVPC SSLSTVATVR CGHCTSLLSV NMNKTSFFPF HLLASLSPVE  60
PKGADKPLKK YSSSIVTYYD CEEEKTPQTS SVVNKPPEKR QRTPSAYNRF IKEEIKRLKA  120
ENPKMAHREA FSTAAKNWAN FPPSNCKGEA DSCKILHLES PNASQCGMGV SIYPTEK*
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0206s00170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-56AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022632838.11e-106axial regulator YABBY 4-like
SwissprotQ9LDT31e-42YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A3Q0ELR41e-104A0A3Q0ELR4_VIGRR; axial regulator YABBY 4-like
STRINGXP_007153748.13e-77(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61442852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.16e-45YABBY family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]