PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0221s00140.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 312aa MW: 34994.9 Da PI: 6.5131

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0221s00140.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.6	2.4e-32	64	117	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+av++LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+ Vradi0221s00140.1 64 PRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 117 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-29	60	118	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.929	60	120	IPR017930	Myb domain
SuperFamily	SSF46689	9.32E-15	63	118	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.4E-23	64	119	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	65	116	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEEERHVSEC SKTSPSIEEG CEESEEENED ESKQNNNGGS SSNSTVEENE KKATVRPYVR 60 SKLPRLRWTP DLHLRFVHAV QRLGGQERAT PKLVLQLMNI KGLSIAHVKS HLQMYRSKKV 120 EANQGRIRYG YGDASLAIYE NMVKTCMNRS SVDESGAEFC GSRLTERANG TNSNIIWNHN 180 VLQADCSGFN ESFCRPIKMN QEDPHQSTEM QPSAQELMPN NDMPSKNLVE LKSLKRKASD 240 SDIDLNLSLK LSSRVSDENH GSMVEHEIDS NLSLSLCSQS SSSYLSSRLR KSSKDHSKEQ 300 GERGRTLDLT I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	65	119	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	65	119	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	65	119	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	65	119	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	65	119	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	65	119	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	65	119	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	65	119	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	65	119	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	65	119	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	65	119	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	65	119	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0221s00140.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014490662.1	0.0	two-component response regulator ORR22
TrEMBL	A0A1S3TA67	0.0	A0A1S3TA67_VIGRR; two-component response regulator ORR22
STRING	XP_007140226.1	1e-141	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-42	G2-like family protein