PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0234s00240.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

YABBY

Protein Properties

Length: 77aa MW: 8291.8 Da PI: 7.2064

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0234s00240.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	86.3	8.7e-27	6	64	5	63
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl 63 ++e+vCyv+CnfCnt lavsvP +s++++vtvrCGhC++llsvn+ + q ++++ Vradi0234s00240.1 6 MATERVCYVHCNFCNTTLAVSVPCSSMLTIVTVRCGHCANLLSVNMGASLQPFPSQETQ 64 679**********************************************9999999864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.0E-27	7	64	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MSMDMMATER VCYVHCNFCN TTLAVSVPCS SMLTIVTVRC GHCANLLSVN MGASLQPFPS 60 QETQQGTGII FKMQII*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0234s00240.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095127	2e-84	BT095127.1 Soybean clone JCVI-FLGm-6F4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014490394.1	1e-40	putative axial regulator YABBY 2
Refseq	XP_017424140.1	1e-40	PREDICTED: putative axial regulator YABBY 2 isoform X1
Refseq	XP_017424142.1	9e-41	PREDICTED: putative axial regulator YABBY 2 isoform X3
Swissprot	Q8GW46	5e-22	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0L9UND0	1e-39	A0A0L9UND0_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SH30	3e-39	A0A0S3SH30_PHAAN; Uncharacterized protein
TrEMBL	A0A1S3T9G6	2e-39	A0A1S3T9G6_VIGRR; putative axial regulator YABBY 2
STRING	XP_007150001.1	4e-39	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-24	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]