PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0246s00360.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 398aa    MW: 45866 Da    PI: 9.0077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0246s00360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.1e-05142165123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        y+C  Cg+ F +++ L++H +  H
  Vradi0246s00360.1 142 YRCRVCGRKFYTNDKLVNHFKQlH 165
                        9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10104.8E-761128IPR029060PIN domain-like
SuperFamilySSF576672.43E-6138168No hitNo description
Gene3DG3DSA:3.30.160.608.4E-5141166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.801142170IPR007087Zinc finger, C2H2
SMARTSM003550.006142165IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280144165IPR007087Zinc finger, C2H2
CDDcd061675.41E-13159283No hitNo description
PfamPF019366.9E-7214294IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10104.8E-7217282IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MVTFKSYLTY RRTDNPFKVS RFRSICFFSL EATCWHIYGG LRYYHSGSEW GKNQKLNPNE  60
KPNRVGLFWD LDNKPPNAIP PFDVANKLRI AASSFGIVRY MVAYANSHTF SHVPQSVREK  120
RKERELLYRL ENKGVIKPNE PYRCRVCGRK FYTNDKLVNH FKQLHEREHG KRINQIESAR  180
GSRRVKLVAK YSMKMEKYKK AASAILTPKV GYGLADELKR AGFWVQTVLD KPQAADRALQ  240
SHIVDVMDHR RVECVVLVSD DSDFVDVIKE ARLRCLKTVV IGDIDDGVLK RTADTAFSWE  300
EILMGKAKKQ AASVVKNWKD RDILKRLEWT YNPDADKNKL DVDDIVAETS EDDNIEDTSD  360
EVDDVYKDDR GSWWELDSDN DVSEGQSGKL SDLSVHK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0246s00360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521739.10.0uncharacterized protein LOC106778308
TrEMBLA0A1S3VUJ70.0A0A1S3VUJ7_VIGRR; uncharacterized protein LOC106778308
STRINGXP_007163793.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-124C2H2 family protein