PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0276s00010.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 319aa    MW: 35710.5 Da    PI: 6.7172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0276s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13119170155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Vradi0276s00010.1 119 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 170
                        79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.01E-14117174No hitNo description
Gene3DG3DSA:4.10.280.103.0E-13118173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16118183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-10124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MALEAVVFPQ DPFSYPCNKD YFYSLLQNNF QEAENKAFLG IITNNIDHTL HANWDSSSPS  60
ALQNIKDQWD SHSSPEPCTV DQSLPAAFPP PPPPSEPTPA RRKRRRTKTT KNKEEIENQR  120
MTHIAVERNR RKQMNEYLAV LRSLMPPSYV QRGDQASIIG GAINFVKELE QLLQCMKGQQ  180
RMKENGGGFS DSSSPFAEFF MFPQYSTRAT QNGRGYPSTC EARSHSWAVA DIEVTLVDGH  240
ANIKILSKKQ PGLLLKMVVG LQTLAFTILH LNVTTVDDMV LTSVSVKVEE GCQMNTVEEI  300
AGAVHELSRR IEEEGVLR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101105RKRRR
2101106RKRRRT
3119130RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0276s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492442.10.0transcription factor bHLH94
SwissprotQ9C7T43e-90BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1S3TFB90.0A0A1S3TFB9_VIGRR; transcription factor bHLH94
STRINGXP_007141222.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]