PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0279s00040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 705aa    MW: 77876.2 Da    PI: 7.3387
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0279s00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.5e-23120221199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++         ++ +   +  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   
  Vradi0279s00040.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL-- 207
                        89****************************997656666..69999********************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        + +++ l+v+++r+
  Vradi0279s00040.1 208 RAENGDLCVGIRRA 221
                        4488999****997 PP
2Auxin_resp1125.6e-37289372183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        aa+ a++k++FevvY+Prast+eF+vk+  ve+al+++++ G Rfkmafetedss++++ +Gt+++v+ +dp++WpnS+Wr+L+
  Vradi0279s00040.1 289 AANLAANKQPFEVVYYPRASTPEFCVKAPLVEAALQIRWCSGIRFKMAFETEDSSRISWfMGTISSVQVADPLNWPNSPWRLLQ 372
                        7899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-36114223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-29114221IPR015300DNA-binding pseudobarrel domain
CDDcd100173.56E-21119220No hitNo description
SMARTSM010196.0E-21120222IPR003340B3 DNA binding domain
PfamPF023622.2E-21120221IPR003340B3 DNA binding domain
PROSITE profilePS5086313.014120222IPR003340B3 DNA binding domain
PfamPF065075.9E-32289372IPR010525Auxin response factor
PROSITE profilePS5174522.227618698IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MREMITFMDS KEKSKEAERC LDPQLWHACA GGMVQMPAVN TKVYYFPQGH AEHACGPVNF  60
RTCPKVRPLV PCRVAAIKYM ADPDTDEVYA KLRLAPLSVN DADYDRDVVG PETQEKPASF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQNI LAKDVHGETW KFRHIYRGTP  180
RRHLLTTGWS TFVNHKKLVA GDSIVFLRAE NGDLCVGIRR AKKGIGGGLE GSSGWNPSGG  240
SCPMPYGGFS PFLREDDNRI LRNGNSNGLN PSVSMTGRGK VRPEAVVEAA NLAANKQPFE  300
VVYYPRASTP EFCVKAPLVE AALQIRWCSG IRFKMAFETE DSSRISWFMG TISSVQVADP  360
LNWPNSPWRL LQVTWDEPDL LQNVRRVSPW LVELVSNMPA IHLSPFSPPR KKLRLPQHPD  420
FPLEGQIPLP TFSGNLLGPS NTNQFGCLPE STPAGMQGAR HGHYGLPISD LHFSKLHSGL  480
FPAGFPPIDN AATPMRISNN QPLQKPSISE NVSCLLSMAN STPSSKKTEE GKTPQLVLFG  540
QRILTEQQIS LSSSVDTFSP VLTKNCCSDG HAEKVPNISD CSGSALHQQQ GQQEQRSSCE  600
RFQWYKDNPQ ETEAGLETGH CKVFMESEDV GRTMDLSLLR SYDELYRRLA DMFGIEKSEM  660
LSQVLYRDSN GAVKHIGDEP LSDFIKSARR LTILTDSGSN NVGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-751139341388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0279s00040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492359.10.0auxin response factor 22
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S3TF210.0A0A1S3TF21_VIGRR; Auxin response factor
STRINGXP_007144353.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]