PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g00210.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 226aa    MW: 25639.4 Da    PI: 7.2929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g00210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH223e-07127159640
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STC CS
              HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsK 40 
                      +++Er RR ri +++ +L+el+P+ +   +   l+K
  Vradi02g00210.1 127 SIAERVRRTRISDRIRKLQELVPNmD---KINSLTK 159
                      689*********************77...3333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.518121181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-6124159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-5125160No hitNo description
Gene3DG3DSA:4.10.280.107.7E-6126156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-4127157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MQPKSTARLP SFRSTPASWL ESVLLKEEEE QEEEEEEQVD IQQAEEEPLT FTQLLSTIAA  60
PSPSQRYDTQ DYPPTTMSMS MSIPNSIAPK ELYASAPHLK VDNMFTFEDS VPCRVRAKRG  120
CATHPRSIAE RVRRTRISDR IRKLQELVPN MDKINSLTKA PPSKAGEFGI LPTIGSSTRK  180
RLLYRIFTLD FVVFLLYCAP YLSSLPWLAF SFVNCITELR FSQKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g00210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-119AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494068.11e-107transcription factor bHLH80
TrEMBLA0A1S3TJW81e-106A0A1S3TJW8_VIGRR; transcription factor bHLH80
STRINGXP_007131294.15e-60(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-18bHLH family protein