PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g01160.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 423aa    MW: 47825.1 Da    PI: 5.9468
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g01160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.13.5e-100244212374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaa.rlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      ++lL ecA + +sg++  a+++L  ls+laspdgd+mqR+a+yfteALa+ +la++  ++ k l+  ++ +  + e+    +lf++  P+lk++
  Vradi02g01160.1  24 IQLLNECASFTESGNFIDADTALYDLSHLASPDGDSMQRVATYFTEALAHcQLAKNLRGVPKVLRLVRALS--TPEQQLLNHLFFDFYPFLKIA 115
                      799*********************************************97578889999999997776663..5555567789*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      h ++Nq+I ea++ge+++ ++D++ s+  QW +L+q L +   ++p l+iT+ +   +++ke lee++ rL+  Ae+l+ +f+fn+ v+++le+
  Vradi02g01160.1 116 HTITNQTIIEAMQGETAINVLDLSPSNADQWSNLMQGLREHVTNTPYLKITVTAI--HEKKEVLEEMELRLKVEAERLNFHFKFNA-VVSSLES 206
                      **************************************************98888..449**************************.799**** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrll...............................desvsleserdevLklvkslsPkvvvvveqeadhnse 251
                      l++e+L +k+gE la+++vl+lh+ll                                ++ ++++  +++L+ +++l+Pkv+v++eqe++ n++
  Vradi02g01160.1 207 LDPETLPIKKGEPLAICCVLRLHSLLaanddemvkmkvqrafaemlinqspdsalspFSPCPSQK-MESFLNGLWRLRPKVMVITEQESNVNGG 299
                      ***************************************************99998634444444.788************************* PP

             GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                      s+ er+++al++y +lfd+lea+++r+   r+ +E++llg+ei+n+vaceg er+erhe+le+W  rle aGF+++++s++    a+ ll+ + 
  Vradi02g01160.1 300 SLTERVFKALSFYCTLFDCLEASASRTLIGRSLLEKMLLGEEIKNIVACEGVERKERHEKLETWIPRLELAGFGTAAVSSNGIWLAEKLLQSYV 393
                      ********************************************************************************************98 PP

             GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        gy+++++++ l+++W++ pL+s+SaW+
  Vradi02g01160.1 394 -PGYHMHQKNQFLFICWEKIPLFSISAWK 421
                      .9**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.1711402IPR005202Transcription factor GRAS
PfamPF035141.2E-9724421IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MYMSGSQYHL QGSKDWDEDG IKIIQLLNEC ASFTESGNFI DADTALYDLS HLASPDGDSM  60
QRVATYFTEA LAHCQLAKNL RGVPKVLRLV RALSTPEQQL LNHLFFDFYP FLKIAHTITN  120
QTIIEAMQGE TAINVLDLSP SNADQWSNLM QGLREHVTNT PYLKITVTAI HEKKEVLEEM  180
ELRLKVEAER LNFHFKFNAV VSSLESLDPE TLPIKKGEPL AICCVLRLHS LLAANDDEMV  240
KMKVQRAFAE MLINQSPDSA LSPFSPCPSQ KMESFLNGLW RLRPKVMVIT EQESNVNGGS  300
LTERVFKALS FYCTLFDCLE ASASRTLIGR SLLEKMLLGE EIKNIVACEG VERKERHEKL  360
ETWIPRLELA GFGTAAVSSN GIWLAEKLLQ SYVPGYHMHQ KNQFLFICWE KIPLFSISAW  420
KF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-351742013378Protein SCARECROW
5b3h_A9e-361742012377Protein SCARECROW
5b3h_D9e-361742012377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g01160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521530.10.0scarecrow-like protein 3
TrEMBLA0A1S3VT970.0A0A1S3VT97_VIGRR; scarecrow-like protein 3
STRINGXP_007131457.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1632579
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-113scarecrow-like 3