PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g01930.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 488aa    MW: 54787 Da    PI: 5.9961
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g01930.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.61.5e-139604841374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lLl+cA++v++g+le+a+a+L+++s laspdgd+mqR+aayf+e La r++++++++ +al++++ +    see+ ++klf+e++P+lk++
  Vradi02g01930.1  60 LIHLLLTCANHVAAGNLENANATLEQISLLASPDGDTMQRIAAYFMESLADRILKTWPGIHRALNSTKVT--MLSEEILVQKLFFELFPFLKVA 151
                      689*************************************************************999998..69******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      ++++NqaI ea+ege+ +HiiD+++ + +QW+aLlq L++Rpegpp+l+iTg+++    +ke l ++++rL++ Ae+l++pf+fn+ v+++le+
  Vradi02g01930.1 152 YVLTNQAIIEAMEGEKVIHIIDLNAAEATQWIALLQVLSARPEGPPHLKITGIHQ----KKEILDQVAHRLTEEAEKLDIPFQFNP-VVSKLEN 240
                      *******************************************************....9**************************.799**** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrll..............................................................desvsl 220
                      l++++Lrvk+gEala++++lqlh+ll                                                              ++s+  
  Vradi02g01930.1 241 LDFDKLRVKTGEALAISSILQLHSLLafddealrrksprllkgsngihmqrvlplsqttlgdmlekdmvngytpspdstssspasfttSNSM-- 332
                      ********************************************************************************999765333333.. PP

             GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                        + +++L+++++lsPkv+ v+eq+++hn++++++r+leal+ y+alfd+le++++r s er  vE++++g+ei+n++aceg +r+erhe+lek
  Vradi02g01930.1 333 --NMESFLNALWGLSPKVMAVTEQDCNHNGPTLMDRLLEALYSYAALFDCLESTVSRSSLERLRVEKMIFGEEIKNIIACEGPDRKERHEKLEK 424
                      ..4577**************************************************************************************** PP

             GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      W +r+++aGF++vpls++ ++qa++ ++ ++s+gyr+ +e+g+++++W+drp++s+SaWr
  Vradi02g01930.1 425 WFQRFDQAGFGNVPLSYYGMMQARRFVQSYGSEGYRMRDENGCVLICWQDRPMFSISAWR 484
                      ***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.00634464IPR005202Transcription factor GRAS
PfamPF035145.1E-13760484IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MRSSVADLVS MGLVWLEEGS SSVSSSPLQL FSMMSLSPSL SSPNNLLLRE MKSEERGLYL  60
IHLLLTCANH VAAGNLENAN ATLEQISLLA SPDGDTMQRI AAYFMESLAD RILKTWPGIH  120
RALNSTKVTM LSEEILVQKL FFELFPFLKV AYVLTNQAII EAMEGEKVIH IIDLNAAEAT  180
QWIALLQVLS ARPEGPPHLK ITGIHQKKEI LDQVAHRLTE EAEKLDIPFQ FNPVVSKLEN  240
LDFDKLRVKT GEALAISSIL QLHSLLAFDD EALRRKSPRL LKGSNGIHMQ RVLPLSQTTL  300
GDMLEKDMVN GYTPSPDSTS SSPASFTTSN SMNMESFLNA LWGLSPKVMA VTEQDCNHNG  360
PTLMDRLLEA LYSYAALFDC LESTVSRSSL ERLRVEKMIF GEEIKNIIAC EGPDRKERHE  420
KLEKWFQRFD QAGFGNVPLS YYGMMQARRF VQSYGSEGYR MRDENGCVLI CWQDRPMFSI  480
SAWRSRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-52424861381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g01930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519312.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1S3VM750.0A0A1S3VM75_VIGRR; scarecrow-like protein 3 isoform X1
STRINGXP_007131568.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]