PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g01980.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 438aa    MW: 47951.5 Da    PI: 6.1384
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g01980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.96.1e-116694283374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                       lLl+cAe+v+ ++l  a+ lL ++ el+sp g++ +R+ ayf++AL+ar+++s+ + y+ l++++ + ++s++ ++a++ ++ vsP++kfsh+
  Vradi02g01980.1  69 GLLLQCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHF 162
                      58******************************************************************99************************ PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      taNqaI +a+ege+rvHiiD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e l +tg+rLa+fA++lg+pfef+++  k  +  e
  Vradi02g01980.1 163 TANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGS----SSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTE 252
                      *****************************************************....99*************************8777777779 PP

             GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                      l++L v+  Ea++V++++  h l+d ++s       +L+l+ +l+Pk+++ veq+++h ++sFl+rf+eal+yysalfd+l  +l+++s er++
  Vradi02g01980.1 253 LSQLGVRASEAIVVHWMH--HCLYDITGSDLG----TLRLLTQLRPKLITTVEQDLSH-AGSFLARFVEALHYYSALFDALGDGLGTDSLERHT 339
                      ****************99..777777777777....**********************.899******************************** PP

             GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      vE++llg ei+n+va  g +r+ + + +e+W + l++aGF+pv+l+ + a+qa+lll +++++gy++ ee+gsl lgWkd +L+ +SaW+
  Vradi02g01980.1 340 VEQQLLGCEIRNIVAVGGPKRTGEVK-VERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQ 428
                      ********************998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.51541408IPR005202Transcription factor GRAS
PfamPF035142.1E-11369428IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MLQSLVPRSP RTSNPNDMKT KRPVDTADSP ADQPSFKRTN FSADTATEDD QAFDPQPHAA  60
ESTGLKLLGL LLQCAECVAM DKLDFANDLL PEIAELSSPF GTSPERVGAY FAQALQARVV  120
SSCLGSYSPL TAKSVTLTQS QRIFNAFQSY NSVSPLVKFS HFTANQAIFQ ALEGEDRVHI  180
IDLDIMQGLQ WPGLFHILAS RSKKIRSMRI TGFGSSSELL DSTGRRLADF ASSLGLPFEF  240
HPVEGKIGSV TELSQLGVRA SEAIVVHWMH HCLYDITGSD LGTLRLLTQL RPKLITTVEQ  300
DLSHAGSFLA RFVEALHYYS ALFDALGDGL GTDSLERHTV EQQLLGCEIR NIVAVGGPKR  360
TGEVKVERWA DELKRAGFRP VSLRGNPAAQ ASLLLGMFPW RGYTLVEENG SLKLGWKDLS  420
LLIASAWQPS DLITYPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1627342924379Protein SCARECROW
5b3h_D1e-1627342924379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g01980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494629.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A1S3TLI40.0A0A1S3TLI4_VIGRR; scarecrow-like protein 23
STRINGXP_007131575.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]