PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g04660.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 174aa    MW: 19161.7 Da    PI: 5.2776
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g04660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-053254123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + Fs+   L  H++ H
  Vradi02g04660.1 32 YECNFCRRGFSNAQALGGHMNIH 54
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.3E-62558IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.66E-72959No hitNo description
PROSITE profilePS5015711.5933259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MESDHDHQQA AISENPSDGE DQGATHVASR SYECNFCRRG FSNAQALGGH MNIHRKDKAK  60
LKQQQSSNQP SLDKVVPPQD QTKSGEERNT PKWNWNVSQE EHASSRASHT RQQLPLFEES  120
PTSSETLKPQ GQNTTEGALS STRDSSLKLD LELRLGLEPQ DSSPETDIAS NPI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g04660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493724.11e-120transcriptional regulator TAC1
TrEMBLA0A1S3TIW81e-118A0A1S3TIW8_VIGRR; transcriptional regulator TAC1
STRINGXP_007132037.11e-101(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.15e-17C2H2 family protein