PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g05100.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 260aa    MW: 30015.4 Da    PI: 5.4221
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g05100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-18855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++lv  v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  Vradi02g05100.1  8 RGPWTEEEDLKLVYFVNMFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55
                     89********************************************97 PP
2Myb_DNA-binding49.69.3e-1661106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T +E+ l  +++ ++G++ W++Iar+++ gRt++++k++w++++
  Vradi02g05100.1  61 RGKLTSQEEHLVMELHSKWGNR-WSRIARKLP-GRTDNEIKNFWRTFM 106
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.353355IPR017930Myb domain
SuperFamilySSF466891.68E-296102IPR009057Homeodomain-like
SMARTSM007172.4E-16757IPR001005SANT/Myb domain
PfamPF002492.1E-16855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-21962IPR009057Homeodomain-like
CDDcd001679.71E-121055No hitNo description
PROSITE profilePS5129425.49156110IPR017930Myb domain
SMARTSM007173.5E-1260108IPR001005SANT/Myb domain
PfamPF002491.3E-1361104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2263109IPR009057Homeodomain-like
CDDcd001673.28E-865106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MVQEEMRRGP WTEEEDLKLV YFVNMFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPDLK  60
RGKLTSQEEH LVMELHSKWG NRWSRIARKL PGRTDNEIKN FWRTFMRKKK ALEKKRASPS  120
SSSSSSSLSS INHAVDSHAS KEVGEESFYD TGGYGHDDVM GLISAGEEFS LDDIWKDIVL  180
SEDNNNNIQQ EPLYELQSQE GCNFSSPPAM IYSPSSWEYN SSHPLWVMDE EESNKMLFPA  240
TSDQYYYSCY EQGNAFLTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-2951091104MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-28110951158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-28110951158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g05100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519116.10.0transcription factor MYB59
SwissprotQ9LX821e-73MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A1S3VL790.0A0A1S3VL79_VIGRR; transcription factor MYB59
STRINGGLYMA11G15180.61e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.14e-74myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]