PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g05890.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 620aa    MW: 68570.6 Da    PI: 7.8182
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g05890.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.24.4e-25105206199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD+vvF   ++
  Vradi02g05890.1 105 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVVAKDVQGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFL--RS 194
                      89****************************986445444..8************************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++el+v+++r+
  Vradi02g05890.1 195 ENGELCVGIRRA 206
                      8999******97 PP
2Auxin_resp89.75.4e-302232881983
       Auxin_resp  19 astseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      ast+eF++k+++v++a++++++ GmRfkmafeted+s++++ +Gt+++v+ ldp+rWpnS+Wr+L+
  Vradi02g05890.1 223 ASTPEFCIKASSVRAAMRIQWCSGMRFKMAFETEDASRISWfMGTIASVQVLDPIRWPNSPWRLLQ 288
                      799*************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-3896208IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-2999206IPR015300DNA-binding pseudobarrel domain
CDDcd100172.48E-22104205No hitNo description
PROSITE profilePS5086313.578105207IPR003340B3 DNA binding domain
PfamPF023624.9E-23105206IPR003340B3 DNA binding domain
SMARTSM010192.8E-23105207IPR003340B3 DNA binding domain
PfamPF065071.2E-24222288IPR010525Auxin response factor
PROSITE profilePS5174514.923507587IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MKEGEKVLDP QLWHACAGGM VQMPKVNSKV FYFPQGHAEH AHTNIDLRVP PHILCNVEAV  60
KFMADPETDE VFAKLSLVPL RNSELGPDAE GGADMAEASE KPASFAKTLT QSDANNGGGF  120
SVPRYCAETI FPRLDYSAEP PVQTVVAKDV QGETWRFRHI YRGTPRRHLL TTGWSSFVNQ  180
KKLVAGDSVV FLRSENGELC VGIRRAKKGI GFEVWNSASG SGASTPEFCI KASSVRAAMR  240
IQWCSGMRFK MAFETEDASR ISWFMGTIAS VQVLDPIRWP NSPWRLLQVT WDEPDLLQNV  300
KRVSPWLVEL VSNLPVINFT PFSPPRKKLR FPQHPEFPLD VQFPIPPFSG NQLGPNHPLC  360
GFSDNAPAGI QGARHAQIGT SLSDLHLNSK LQLGLLPSNI QQHGLYSGIS SGNTTNHDKS  420
KESLSHLLTI GKSSKTLEKS DDDKKHQFLL FGQPILTEQQ ISRDVLSRGK KSADDVKDKE  480
KCFLDDSQSS GKASSAAEFS WQLGLDTGHC KVFLESEDVG RTLDLSRLGS YEELYRRLSY  540
MFGVERSEIP NYVFYYDAKG AVKQTGEEPF SDFMKTAKRL TILTDSGSKN VTRAFITGTR  600
NGEHGLDASN KTGPLSIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-80730950388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g05890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518437.10.0auxin response factor 10-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S3VJP70.0A0A1S3VJP7_VIGRR; Auxin response factor
STRINGGLYMA11G20490.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]