PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi02g06060.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 988aa MW: 109262 Da PI: 8.6409

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi02g06060.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	40.2	1.2e-12	22	59	8	45
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkds 45 ++++hTkv+gR RRv l+ +caar+F+L++eL +s Vradi02g06060.1 22 KKDRHTKVNGRERRVLLPPLCAARIFQLTRELDNEINS 59 79******************************876666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-9	21	60	IPR005333	Transcription factor, TCP
Gene3D	G3DSA:3.40.50.300	3.2E-47	439	672	IPR027417	P-loop containing nucleoside triphosphate hydrolase
CDD	cd03213	2.96E-74	441	667	No hit	No description
PROSITE profile	PS50893	17.06	443	684	IPR003439	ABC transporter-like
SuperFamily	SSF52540	9.58E-42	444	680	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00005	6.0E-25	463	612	IPR003439	ABC transporter-like
SMART	SM00382	1.5E-9	469	670	IPR003593	AAA+ ATPase domain
PROSITE pattern	PS00211	0	584	598	IPR017871	ABC transporter, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity

Sequence ? help Back to Top
Protein Sequence Length: 988 aa Download sequence Send to blast
MASTTPVPVK ASNTKLPPLR AKKDRHTKVN GRERRVLLPP LCAARIFQLT RELDNEINSK 60 ETFLPLDFDV FSNFNVEFSA AEIEMLQSLM TRDADWNGAF NFSKDLTFLT ICAQQMKGDI 120 TQRMCTEAEI LAYGQSFGGG KSRSIVLKPN INCNLSSWVN GCEPGWGCKA NQKVDIDSPK 180 KDIPIRSVDC LPCCEGFFCP RGLTCMIPCP LGSYCPLGNL NKTSGVCEPY RYQLPPGKPN 240 HTCGGADIWA DIQSSSEAGL CFLLIIIYNC SDQVLATRER RQASTRERAV QSVRETQARE 300 KWKSAKDIAK KHAVGLQSQL SRTFSRKTSK KPELKGFGSK HSDSAIPPKG KKKDKNNLSK 360 ILNDIEQNPD NPEGFNVEIG DKNVKKQAPR GKQLHTQSQI FKYAYGQIEK EKALAEQNKN 420 LTFSGVISMA SDIEIRKRPT IEVAFKDLTL TLKGKNKHLL RCVTGKLYPG RVSAVMGPSG 480 AGKTTFLSAL TGKATGCHTT GQVHVNGQES SIRSYKKIIG FVPQDDIVHG NLTVEENLWF 540 SARCRLPADL PKEEKVLVVE RVIESLGLQA IRDSLVGTVE KRGISGGQRK RVNVGLEMVM 600 EPSLLILDEP TSGLDSSSSQ LLLRALRREA LEGVNICMVL HQPSYTLFKM FDDFILLAKG 660 GLTVYHGPVN KVEEYFSSMG INVPDRVNPP DYFIDILEGI VKLSPSLGVT YKQLPVRWML 720 HNGYPVPMDM LQSVEGMSAP SGEGSSSGAA TGGEEQAPSF AGELWQDVKC NVEMKKDILH 780 INFLASHDLS NRVTPGVFNQ YKTQAVDFLI LLLAGLCLGT LAKVSDESFG ATGYTYTVIA 840 IAALRSFSLD KLHYWRESSS GMSSLAYFLS KDTVDHFSTI IKPLVYLSMF YFFNNPRSSV 900 VDNYIVLLCL VYCVTGIAYV LAIFLQPGPA QLWSALLPVV LTLVATYQNE DDSKYVKYLS 960 DLCYTKWALE AFVISNAKRP SYRDGNN*

Sequence ? help Back to Top

Protein Sequence Length: 988 aa Download sequence Send to blast

MASTTPVPVK ASNTKLPPLR AKKDRHTKVN GRERRVLLPP LCAARIFQLT RELDNEINSK  60
ETFLPLDFDV FSNFNVEFSA AEIEMLQSLM TRDADWNGAF NFSKDLTFLT ICAQQMKGDI  120
TQRMCTEAEI LAYGQSFGGG KSRSIVLKPN INCNLSSWVN GCEPGWGCKA NQKVDIDSPK  180
KDIPIRSVDC LPCCEGFFCP RGLTCMIPCP LGSYCPLGNL NKTSGVCEPY RYQLPPGKPN  240
HTCGGADIWA DIQSSSEAGL CFLLIIIYNC SDQVLATRER RQASTRERAV QSVRETQARE  300
KWKSAKDIAK KHAVGLQSQL SRTFSRKTSK KPELKGFGSK HSDSAIPPKG KKKDKNNLSK  360
ILNDIEQNPD NPEGFNVEIG DKNVKKQAPR GKQLHTQSQI FKYAYGQIEK EKALAEQNKN  420
LTFSGVISMA SDIEIRKRPT IEVAFKDLTL TLKGKNKHLL RCVTGKLYPG RVSAVMGPSG  480
AGKTTFLSAL TGKATGCHTT GQVHVNGQES SIRSYKKIIG FVPQDDIVHG NLTVEENLWF  540
SARCRLPADL PKEEKVLVVE RVIESLGLQA IRDSLVGTVE KRGISGGQRK RVNVGLEMVM  600
EPSLLILDEP TSGLDSSSSQ LLLRALRREA LEGVNICMVL HQPSYTLFKM FDDFILLAKG  660
GLTVYHGPVN KVEEYFSSMG INVPDRVNPP DYFIDILEGI VKLSPSLGVT YKQLPVRWML  720
HNGYPVPMDM LQSVEGMSAP SGEGSSSGAA TGGEEQAPSF AGELWQDVKC NVEMKKDILH  780
INFLASHDLS NRVTPGVFNQ YKTQAVDFLI LLLAGLCLGT LAKVSDESFG ATGYTYTVIA  840
IAALRSFSLD KLHYWRESSS GMSSLAYFLS KDTVDHFSTI IKPLVYLSMF YFFNNPRSSV  900
VDNYIVLLCL VYCVTGIAYV LAIFLQPGPA QLWSALLPVV LTLVATYQNE DDSKYVKYLS  960
DLCYTKWALE AFVISNAKRP SYRDGNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5nj3_A	1e-53	457	699	70	309	ATP-binding cassette sub-family G member 2
5nj3_B	1e-53	457	699	70	309	ATP-binding cassette sub-family G member 2
5njg_A	1e-53	457	699	70	309	ATP-binding cassette sub-family G member 2
5njg_B	1e-53	457	699	70	309	ATP-binding cassette sub-family G member 2
6eti_A	1e-53	457	699	61	300	ATP-binding cassette sub-family G member 2
6eti_B	1e-53	457	699	61	300	ATP-binding cassette sub-family G member 2
6feq_A	1e-53	457	699	61	300	ATP-binding cassette sub-family G member 2
6feq_B	1e-53	457	699	61	300	ATP-binding cassette sub-family G member 2
6ffc_A	1e-53	457	699	70	309	ATP-binding cassette sub-family G member 2
6ffc_B	1e-53	457	699	70	309	ATP-binding cassette sub-family G member 2
6hij_A	1e-53	457	699	61	300	ATP-binding cassette sub-family G member 2
6hij_B	1e-53	457	699	61	300	ATP-binding cassette sub-family G member 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi02g06060.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014522341.1	0.0	ABC transporter G family member 28 isoform X2
Swissprot	Q9FF46	0.0	AB28G_ARATH; ABC transporter G family member 28
TrEMBL	A0A445HMI6	0.0	A0A445HMI6_GLYSO; ABC transporter G family member 28
STRING	XP_007132291.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF914	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	3e-11	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14

Publications ? help Back to Top
Sánchez-Fernández R,Davies TG,Coleman JO,Rea PA The Arabidopsis thaliana ABC protein superfamily, a complete inventory. J. Biol. Chem., 2001. 276(32): p. 30231-44 [PMID:11346655] Garcia O,Bouige P,Forestier C,Dassa E Inventory and comparative analysis of rice and Arabidopsis ATP-binding cassette (ABC) systems. J. Mol. Biol., 2004. 343(1): p. 249-65 [PMID:15381434] Bock KW, et al. Integrating membrane transport with male gametophyte development and function through transcriptomics. Plant Physiol., 2006. 140(4): p. 1151-68 [PMID:16607029] Sugiyama A, et al. Genome-wide analysis of ATP-binding cassette (ABC) proteins in a model legume plant, Lotus japonicus: comparison with Arabidopsis ABC protein family. DNA Res., 2006. 13(5): p. 205-28 [PMID:17164256] Verrier PJ, et al. Plant ABC proteins--a unified nomenclature and updated inventory. Trends Plant Sci., 2008. 13(4): p. 151-9 [PMID:18299247]