PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi02g07200.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

YABBY

Protein Properties

Length: 208aa MW: 23345.5 Da PI: 8.6823

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi02g07200.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	91.4	2.2e-28	52	184	20	170
YABBY 20 tilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvp 113 + vsvP++sl+++vtvrCGhC++llsvn+ + q + ++ ++++++ +ee + k+ +++++ ++ + e ++e pr+p Vradi02g07200.1 52 YPIHVSVPYNSLLTIVTVRCGHCANLLSVNMGASLQPFPPQDP------QSQKQHISFEEPSSKELGSSSSKCNKIAPF----EAVEHEPPRIP 135 4578*************************999999998885......233444445555555444444444444444....45677889999 PP YABBY 114 pvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 p irP ekr rvPsaynrfi q d + r s + WahfP+ihfgl Vradi02g07200.1 136 P-IRPTEKRHRVPSAYNRFINKSFQ-----VSDFAGRK--SKGLRLWAHFPHIHFGL 184 8.9*************99887.....46888887..78889********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.4E-31	47	184	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MSGSERCCYY MDVFNVPHHT TLSPAGHCTH TLKMLHGVLW KHFSWECESF TYPIHVSVPY 60 NSLLTIVTVR CGHCANLLSV NMGASLQPFP PQDPQSQKQH ISFEEPSSKE LGSSSSKCNK 120 IAPFEAVEHE PPRIPPIRPT EKRHRVPSAY NRFINKSFQV SDFAGRKSKG LRLWAHFPHI 180 HFGLKLDGNS QGKLEQGEGG EKTNGFY*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi02g07200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090571	1e-115	BT090571.1 Soybean clone JCVI-FLGm-4H4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022634275.1	1e-122	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	2e-46	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A3Q0ERG4	1e-121	A0A3Q0ERG4_VIGRR; putative axial regulator YABBY 2 isoform X1
STRING	GLYMA06G46560.1	8e-79	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-30	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]