PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi02g07590.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 184aa MW: 21153.5 Da PI: 8.45

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi02g07590.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	87.6	2.2e-27	3	90	42	128
NAM 42 vePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +P L + +++++++w+fFs+ ++++a+g r++r+t+sgyWkatg+ v+s++++++g+kk++vfykg+ap g+kt+W m+eyr+ Vradi02g07590.1 3 DHPPALAgELCRGDTEQWFFFSPGQEREARGGRPSRTTASGYWKATGSPGYVYSSDNRVIGVKKSMVFYKGKAPMGRKTKWKMNEYRA 90 5888998555666778**********************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	31.137	1	111	IPR003441	NAC domain
SuperFamily	SSF101941	3.79E-29	4	109	IPR003441	NAC domain
Pfam	PF02365	8.3E-13	6	89	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MEDHPPALAG ELCRGDTEQW FFFSPGQERE ARGGRPSRTT ASGYWKATGS PGYVYSSDNR 60 VIGVKKSMVF YKGKAPMGRK TKWKMNEYRA ISNPVTPQLR CEFSLYRVYI VSGSFRAFDR 120 RPSETDGTES RFCQSSSQLR QLSQLSQLPE TGDSSSRNWN EEQLQEPSWE LEWEHFNWVE 180 LKN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-19	7	91	66	143	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-19	7	91	66	143	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-19	7	91	66	143	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-19	7	91	66	143	NO APICAL MERISTEM PROTEIN
3swm_A	4e-19	7	91	69	146	NAC domain-containing protein 19
3swm_B	4e-19	7	91	69	146	NAC domain-containing protein 19
3swm_C	4e-19	7	91	69	146	NAC domain-containing protein 19
3swm_D	4e-19	7	91	69	146	NAC domain-containing protein 19
3swp_A	4e-19	7	91	69	146	NAC domain-containing protein 19
3swp_B	4e-19	7	91	69	146	NAC domain-containing protein 19
3swp_C	4e-19	7	91	69	146	NAC domain-containing protein 19
3swp_D	4e-19	7	91	69	146	NAC domain-containing protein 19
4dul_A	4e-19	7	91	66	143	NAC domain-containing protein 19
4dul_B	4e-19	7	91	66	143	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi02g07590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-148	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014493634.1	1e-129	NAC domain-containing protein 90
Swissprot	Q9FMR3	4e-61	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1S3TIN1	1e-128	A0A1S3TIN1_VIGRR; NAC domain-containing protein 90
STRING	XP_007132453.1	1e-103	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	3e-64	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]