PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g08110.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 225aa    MW: 25899.2 Da    PI: 7.2522
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g08110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd++l  +v+++G  +W+  ++  g+ R++k+c++rw++yl
  Vradi02g08110.1 14 KGAWSREEDDKLRAYVHKYGHSNWRQLPKFAGLARCGKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.21.6e-1768112248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+ T+eE+e+++++++q+G++ W++Ia+++  gRt++++k++w+++l
  Vradi02g08110.1  68 GNYTPEEEEIIIRLHQQFGNR-WSLIAEKLA-GRTDNEVKNYWHSHL 112
                      789******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.39961IPR017930Myb domain
SuperFamilySSF466892.93E-3011108IPR009057Homeodomain-like
SMARTSM007174.4E-131363IPR001005SANT/Myb domain
PfamPF002492.3E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-241568IPR009057Homeodomain-like
CDDcd001679.17E-111661No hitNo description
PROSITE profilePS5129425.79262116IPR017930Myb domain
SMARTSM007171.7E-1766114IPR001005SANT/Myb domain
PfamPF002491.3E-1568112IPR001005SANT/Myb domain
CDDcd001677.52E-1369112No hitNo description
Gene3DG3DSA:1.10.10.608.3E-2769117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVRTPFYDKN GVKKGAWSRE EDDKLRAYVH KYGHSNWRQL PKFAGLARCG KSCRLRWLNY  60
LRPNLKHGNY TPEEEEIIIR LHQQFGNRWS LIAEKLAGRT DNEVKNYWHS HLKKSLKRSE  120
MTASELKLKG ADDKSFEGNL KENCGDDIFP HILESSLAIS AETAEGDNYS EDGLPPLVSY  180
KQFSGDFWSE PFLLEDTIHT FKDDIFTAKG MALLIPNFDA AYFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g08110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-72AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523889.11e-168transcription factor MYB14-like
TrEMBLA0A1S3W0T61e-167A0A1S3W0T6_VIGRR; transcription factor MYB14-like
STRINGXP_007132613.11e-121(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.17e-59myb domain protein 14