PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g09020.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 567aa    MW: 62950.1 Da    PI: 6.2065
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g09020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS410.71.4e-1251965651373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l+elL+  A+a+s+++++  ++l+++ +  +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    ++ l++ +l++e++P+lkf+
  Vradi02g09020.1 196 LKELLIVSAKALSENNMKDFDRLIEKARSVVSITGEPIQRLGAYLVEGLVARKGASGNNIYRALRCREPE---GKDLLSYIQLLYEICPYLKFG 286
                      5789*****************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      +++aN aI ea   e+++HiiDf+i+qG+QW++LlqaLa+Rp+g+p++Ri g+++p s+  + + le++g+rLa++ +++++p+ef+  v    
  Vradi02g09020.1 287 YMAANGAIAEACRDEDQIHIIDFQIGQGIQWMTLLQALAARPGGAPHVRISGIDDPLSKyvRGDGLEAVGKRLAEISQTFNIPVEFHS-VPVLA 379
                      *******************************************************999999***************************.57778 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                        ++ ++L+++pgEalaVn+ lqlh++ desv+++++rd +L+lvkslsPkv +++eqe+++n+++F++rf+e+l+yy a+f+s++++l+r+s+
  Vradi02g09020.1 380 PYVTKDMLDIRPGEALAVNFPLQLHHTADESVDMNNPRDGLLRLVKSLSPKVTTLIEQESNTNTTPFFNRFIETLDYYLAIFESIDVSLARKSK 473
                      89999***************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +ri+vE+++l+r+ivn+vaceg+er+erhe l+kW++r+++aGF+++pls+++++ +++llr ++ + y++ e++g+++lgWkdr+L+s+SaW
  Vradi02g09020.1 474 DRINVEQHCLARDIVNIVACEGKERVERHELLGKWKSRFTMAGFSQYPLSSYVNSVIRSLLRCYS-EHYNLVEKDGAMLLGWKDRNLISASAW 565
                      *************************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.799170547IPR005202Transcription factor GRAS
PfamPF035144.8E-123196565IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MMDLNEFSSV GVTSSAGIPC TSSYNPISAI PNRLLGSLEQ NIEHSPNSAL STHFDSDTLS  60
SALSDGQEQH TAGEIHSGVN PLQETNHYLY RPVSPVDHLQ DGKHLSTRCF FPLDIGYDHE  120
TRYALLELES ALMAPDGDDQ VTTSSTSLGV SRRSTTSAQR NRSWSHEGQP SDVARVGKRH  180
KSTEEVSLQG FPSTNLKELL IVSAKALSEN NMKDFDRLIE KARSVVSITG EPIQRLGAYL  240
VEGLVARKGA SGNNIYRALR CREPEGKDLL SYIQLLYEIC PYLKFGYMAA NGAIAEACRD  300
EDQIHIIDFQ IGQGIQWMTL LQALAARPGG APHVRISGID DPLSKYVRGD GLEAVGKRLA  360
EISQTFNIPV EFHSVPVLAP YVTKDMLDIR PGEALAVNFP LQLHHTADES VDMNNPRDGL  420
LRLVKSLSPK VTTLIEQESN TNTTPFFNRF IETLDYYLAI FESIDVSLAR KSKDRINVEQ  480
HCLARDIVNI VACEGKERVE RHELLGKWKS RFTMAGFSQY PLSSYVNSVI RSLLRCYSEH  540
YNLVEKDGAM LLGWKDRNLI SASAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-611965665375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g09020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493465.10.0scarecrow-like protein 21
RefseqXP_022634369.10.0scarecrow-like protein 21
RefseqXP_022634370.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1S3TI880.0A0A1S3TI88_VIGRR; scarecrow-like protein 21
STRINGXP_007132993.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-175GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]