PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi02g09730.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

FAR1

Protein Properties

Length: 187aa MW: 21263 Da PI: 7.834

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi02g09730.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.3	6e-19	45	130	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 kfY +YA ++GF v +++skk k+n+ ++ ++vCs+egk ++ k e +t+a++ +C ++++ ++ d+ w++++++l+H+H+l+p Vradi02g09730.1 45 KFYTNYAITCGFVVMTRSSKKDKDNN-VYYLRLVCSREGKYVSSIKP---EVKTHASQTYQCPTSITIGRK-DNYWVIKSVVLDHSHDLCP 130 6************99999986665.**********999888...99*************99.9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-16	45	130	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MMATSTSHVN DLPHCYANGD EPNQTFMDNE PRINMCFDSM EDANKFYTNY AITCGFVVMT 60 RSSKKDKDNN VYYLRLVCSR EGKYVSSIKP EVKTHASQTY QCPTSITIGR KDNYWVIKSV 120 VLDHSHDLCP NTSKLIPRNR KLSMQAKHTL QVNDDVGVRI NKSFLSIVSD VGGFENMEFV 180 ERDARN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi02g09730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014492560.1	1e-127	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S3TFL5	1e-126	A0A1S3TFL5_VIGRR; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_007134998.1	1e-44	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-13	FAR1 family protein