PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g10020.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 232aa    MW: 24970.9 Da    PI: 7.9001
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g10020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.82.7e-12128102129
              NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
                      +kktLvfy+grapkgek++Wvmheyrle
  Vradi02g10020.1   1 MKKTLVFYRGRAPKGEKSNWVMHEYRLE 28 
                      8*************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023656.9E-5127IPR003441NAC domain
PROSITE profilePS5100517.382142IPR003441NAC domain
SuperFamilySSF1019415.36E-12136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MKKTLVFYRG RAPKGEKSNW VMHEYRLEGK FAYHYLSRSS KKNNTGGAST VSAAAATGSS  60
KKTRMSTSNT SSNMSLCPEP GSPCSIYLPP LLESSPYATS GSAAATFNDR ENYSFESAAA  120
TANQREHVSC FSTMSTDAAA FNHLAPPPEP PLDPFSRFHR NNIGVSAFPC LRSLHDNLNL  180
PFFFPPVVQG GSDVPNFTAI ANLPAPEDQR VADGSSGMPI VPSELDCMWG Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g10020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027911896.11e-147protein CUP-SHAPED COTYLEDON 2-like
TrEMBLA0A4D6LDC11e-145A0A4D6LDC1_VIGUN; Uncharacterized protein
STRINGXP_007133204.11e-129(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36893463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.18e-24NAC family protein