PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g10520.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 126aa    MW: 14670.8 Da    PI: 9.6903
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g10520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.4e-192275356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     ++ ++t+eq+++Le++F++n+++  e++ +LA++l ++ rqV +W+qN+Ra++k
  Vradi02g10520.1 22 NKKRLTEEQVTILEKCFASNMKLEPEQKFHLANQLAVPPRQVAIWYQNKRARWK 75
                     66789************************************************9 PP
2HD-ZIP_I/II111.84.6e-3622108288
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                      +k+rl++eqv++LE++F ++ kLepe+K +la++L + prqva+W+qn+RAR+kt+ lE+d+ +L+++++++++e+++Lek+veeL 
  Vradi02g10520.1  22 NKKRLTEEQVTILEKCFASNMKLEPEQKFHLANQLAVPPRQVAIWYQNKRARWKTQSLEMDHGVLQAKLENVMAEKKQLEKDVEELY 108
                      79***************9999****************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-181278IPR009057Homeodomain-like
PROSITE profilePS5007115.9041777IPR001356Homeobox domain
SMARTSM003891.1E-151981IPR001356Homeobox domain
CDDcd000865.13E-132078No hitNo description
PfamPF000469.5E-172275IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-182382IPR009057Homeodomain-like
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MGDLIFSFKT QQEHGHQRAK HNKKRLTEEQ VTILEKCFAS NMKLEPEQKF HLANQLAVPP  60
RQVAIWYQNK RARWKTQSLE MDHGVLQAKL ENVMAEKKQL EKDVEELYAY FMGANYGSGL  120
HEKRA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g10520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-146AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493595.15e-73homeobox-leucine zipper protein ATHB-52
SwissprotQ9FN293e-29ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBLA0A1S3TIL61e-71A0A1S3TIL6_VIGRR; homeobox-leucine zipper protein ATHB-52
STRINGXP_007133162.11e-65(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-31homeobox protein 52