PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi02g11280.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 216aa MW: 24139.3 Da PI: 9.8069

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi02g11280.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.2	3.4e-32	9	84	52	128
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++s ++++vg+kk+Lvfy g+ pkg+ktdW+mheyrl Vradi02g11280.1 9 SFGEEEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPICS-GTQKVGVKKSLVFYGGKPPKGVKTDWIMHEYRL 84 44789************************************.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.86	1	118	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-39	8	118	IPR003441	NAC domain
Pfam	PF02365	1.2E-15	13	84	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MLISTTKASF GEEEWYFFSP RDRKYPNGAR PNRAATSGYW KATGTDKPIC SGTQKVGVKK 60 SLVFYGGKPP KGVKTDWIMH EYRLVETKPN NRPPGCDLGH KKNSLRLDDW VLCRIYKKGN 120 TQRSGMEQER DDSMDEMIGE VPSSMNVGHM NARFHLSKIN GNVSVMRTEE NNASPGSFAT 180 LLNQLPQTPS LPQIGSMGDG LLRTQYQLQG TNWYG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-48	7	121	65	168	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-48	7	121	65	168	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-48	7	121	65	168	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-48	7	121	65	168	NO APICAL MERISTEM PROTEIN
4dul_A	5e-48	7	121	65	168	NAC domain-containing protein 19
4dul_B	5e-48	7	121	65	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi02g11280.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-151	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014518387.1	1e-111	NAC transcription factor 56 isoform X3
Refseq	XP_022634499.1	1e-111	NAC transcription factor 56 isoform X1
Swissprot	Q9LD44	1e-75	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A1S3VJJ7	1e-110	A0A1S3VJJ7_VIGRR; NAC transcription factor 56 isoform X3
TrEMBL	A0A3Q0EVP9	1e-110	A0A3Q0EVP9_VIGRR; NAC transcription factor 56 isoform X1
STRING	XP_007133059.1	1e-106	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1623	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	5e-78	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]