PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g11870.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YC
Protein Properties Length: 216aa    MW: 23773.8 Da    PI: 5.2106
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g11870.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC51.32.5e-1614951797
            NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                      + e+P +r+kki+  d+dvk++s+ea  l+s++ elf+  l+ +s   a e+kr+t++   +  av+r + + dfl+d+ p
  Vradi02g11870.1 14 IQLEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQpTRDFLLDDLP 95
                     3789***************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-201481IPR009072Histone-fold
SuperFamilySSF471138.09E-201683IPR009072Histone-fold
PfamPF008083.1E-191780IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MIAMAEEEEN GVSIQLEFPK SRVKKIMTLD KDVKRVSSEA LFLVSRSTEL FLQFLAEKSA  60
KVAIEKKRKT VNLEHVRMAV KRHQPTRDFL LDDLPPPSEP AKPAKPDGPA KPVVRPKLDE  120
PPSGTRRIDQ FFRKPEPQNP TQAQSPENPA QAQSSEIPAQ AQAPEIPSQA QSPEVPSEPQ  180
SPEVPSETQS PRVPSESQSP EAPSQTQLPL PVDES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g11870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494453.21e-147uncharacterized protein LOC106756506
TrEMBLA0A1S3TL051e-146A0A1S3TL05_VIGRR; uncharacterized protein LOC106756506
STRINGXP_007163752.11e-100(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.18e-42nuclear factor Y, subunit C13