PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g13440.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 304aa    MW: 35109.9 Da    PI: 7.1395
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g13440.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP38.25.1e-12113142231
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaar 31 
                      +gk+drhski+T++g+RdRR+Rls+++a+ 
  Vradi02g13440.1 113 PGKRDRHSKISTAGGLRDRRMRLSLDVARS 142
                      79**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.7E-11114142IPR005333Transcription factor, TCP
PfamPF036340.0032154202IPR005333Transcription factor, TCP
PROSITE profilePS5137010.464182199IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MQSQISDTFP SHCQNETISC YDPAAFNYTR PFSIHSESNP TWKQQNNTDL PPLSFFHFPS  60
PPFEDTHVFL QQHHDFLLQF HHNPPPQNPD PQPVSLSVET SAKKNIQTPR KRPGKRDRHS  120
KISTAGGLRD RRMRLSLDVA RSLDEVAVSR DEEEAGEERV DKVMKRRVKH SRKISAFHPL  180
ARECRERARE RARERTREKM RSRGLAEESK PCREEENQNL IQSGSWKPSE TGEEFVTKSH  240
GLHPSLDEIT EGKEHGYNAK EHDDDDSLVI LSKWSPSLIF NNYGFSHEHQ FAEFQPLGKP  300
WEA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186198RARERARERTREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g13440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490884.21e-172transcription factor TB1-like
TrEMBLA0A1S3TAU41e-171A0A1S3TAU4_VIGRR; transcription factor TB1-like
STRINGGLYMA04G22407.18e-76(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4079522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.24e-09TCP family protein