PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g14260.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 382aa    MW: 41952.7 Da    PI: 8.4657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g14260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88e-13315360655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri  ++ +L++l Pk+    +k  s a++L +AveYIk+Lq
  Vradi02g14260.1 315 SIAERERRTRISARIKKLQDLFPKS----DKQTSTADMLDLAVEYIKDLQ 360
                      689*********************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.259309359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14312373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-11313364No hitNo description
Gene3DG3DSA:4.10.280.104.4E-14314371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-11315365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-10315360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MKHEQIFQGN CGDKMSIVYS HAVKYSQEQQ QSYHPSTSSE METMLAKLIS SDDSEPLQEF  60
GGKPVKEEAG DSGYSFGSSP QIMYQTQQVQ GFSMPNGSLR PAGNGFDSSF SAVNSMASQN  120
STQTKMVAST NCSNLIRQKS SPAGFFSNYS VDNTMREVGS FRSCDVSNGQ AIASDSGLHG  180
TLNFSSRISS SSCSTRMPQI AENGNEVVEV ESRNLRNDSG NTKCYMPSFT SDFWDGSAIS  240
ASRTATNNCE ISFSTSNAMD IQNADFGYQK LGLTHHLSLP SSSTRMATME KLYQTQGTVP  300
CKIRAKRGFA THPRSIAERE RRTRISARIK KLQDLFPKSD KQTSTADMLD LAVEYIKDLQ  360
KQVKMLADTR AKCTCRSNQK Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g14260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493470.10.0transcription factor bHLH130 isoform X2
TrEMBLA0A1S3TI930.0A0A1S3TI93_VIGRR; transcription factor bHLH130 isoform X2
STRINGXP_007133842.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-39bHLH family protein