PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0367s00030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 284aa    MW: 31760.8 Da    PI: 7.2525
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0367s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.7e-10756154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       r++ +  rE+ RRdr+N+ f eL  +l ++     +K++Ka+iL  +++ +k+L
  Vradi0367s00030.1  7 RKTQKADREKLRRDRLNEQFVELGNVLDPD----RPKNDKATILSDTIQLLKDL 56
                       6788999*******************9997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-14576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.071656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13679IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.71E-8761No hitNo description
SMARTSM003533.3E-71262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDCSAARKTQ KADREKLRRD RLNEQFVELG NVLDPDRPKN DKATILSDTI QLLKDLTSQV  60
SKLKEEYATL NEESRELTQE KNDLREEKAS LKSDIDNLNN QYQQQLRTIF PWTAMDHSVV  120
MAPPSYPFPM PVAVPPGSIP MQPFPYFTNQ HPAVISNPHS TFVPYLAPNT IVEQQSTHYV  180
SPPLHPGCRS NVSEKPESKS KSSRESKAEK NEDSNDVTTD LQLKTPGSSA DQGGIAIAIL  240
QTAIYHRIQV LFVYMFCRIY HPDKGNLGSS QEGKAAAARK GIH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0367s00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523150.11e-172transcription factor bHLH121
SwissprotQ9LT233e-93BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A1S3VXV11e-170A0A1S3VXV1_VIGRR; transcription factor bHLH121
STRINGXP_007133432.11e-159(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.14e-88bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]